Bugs item #2947454, was opened at 2010-02-07 11:31
Message generated for change (Comment added) made by hansonr
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Category: None
Group: v11
>Status: Closed
>Resolution: Fixed
Priority: 5
Private: No
Submitted By: Ariel (aog2000a)
Assigned to: Nobody/Anonymous (nobody)
Summary: Write frames {*} only writes the power of 2 frames
Initial Comment:
In v11.9.24 bug #2947411 is now solved, but i met another issue (couldn't
comment on that one, so opening a new one sorry).
I have 39 frames loaded, but write frames {*} only writes frames number 1.1,
2.1, 4.1, 8.1, 16.1 and 32.1 !
$ frame last
$ show frames
file["39.1"] = "/home/ariel/protein/frame-299_-361.970.pdb"
title["39.1"] = ""
name["39.1"] = "1"
$ write FRAMES {*} 1024 768 "protein.jpg"
OK JPG 96955 /home/ariel/protein/protein0001.jpg; quality=-1
OK JPG 100006 /home/ariel/protein/protein0002.jpg; quality=-1
OK JPG 100130 /home/ariel/protein/protein0003.jpg; quality=-1
OK JPG 100330 /home/ariel/protein/protein0004.jpg; quality=-1
OK JPG 99370 /home/ariel/protein/protein0005.jpg; quality=-1
OK JPG 99310 /home/ariel/protein/protein0006.jpg; quality=-1
6 files created; width=1024; height=768
And i see that these pictures correspond to the frames 2**N while jmol is
converting and on the final pictures.
----------------------------------------------------------------------
>Comment By: Bob Hanson (hansonr)
Date: 2010-02-07 14:51
Message:
Oy. Thanks -- 11.9.24 is totally messed up-- not just the write command. A
simple typo, but with great significance. DO NOT USE 11.9.24.
11.9.25 will be released soon; in the mean time, use
http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.zip
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Comment By: Ariel (aog2000a)
Date: 2010-02-07 14:17
Message:
Hi, thanks for the immediate answer! :-)
I am using a bunch of "load APPEND" lines (with no other molecule loaded
before).
I now managed to recreate the problem with a way simpler script:
---------------
$ load APPEND "frame-000_-246.512.pdb"
load APPEND "frame-002_-251.383.pdb"
load APPEND "frame-008_-263.272.pdb"
load APPEND "frame-010_-266.739.pdb"
$ write FRAMES {*} "a.jpg"
OK JPG 39728 /home/ariel/protein/a0001.jpg; quality=-1
OK JPG 33904 /home/ariel/protein/a0002.jpg; quality=-1
OK JPG 33904 /home/ariel/protein/a0003.jpg; quality=-1
3 files created; width=1024; height=745
$
---------
This is just after starting jmol with no file. As you see i loaded 4
molecules and it wrote only 3, the frames 1,2, and 4.
But version 11.8.13 works fine, it is just the testing branch which has
the issue.
----------------------------------------------------------------------
Comment By: Bob Hanson (hansonr)
Date: 2010-02-07 13:39
Message:
very odd indeed. What does the load command look like for this set of
models?
----------------------------------------------------------------------
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https://sourceforge.net/tracker/?func=detail&atid=379133&aid=2947454&group_id=23629
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