Here is a reproducable bug:
I noticed it in STRAP but it can be reproduced with the stand alone Jmol
It can be reproduced on Linux with the following steps:
Download Jmol and start the script ./jmol
Open Jmol console
$ load /home/n/m1/pdb1sbt.ent
$ cartoon on
$ load append /home/n/m1/pdb1sbc.ent
2 models
$ cartoon on
Open ContextMenu select models [all]
Now both are shown
$ zoom
$ select all
3,876 atoms selected
$ zoom
$ select 1.1
1,955 atoms selected
$ cartoon off
$ zap 1.1
1,955 atoms deleted
1,921 atoms selected
$
The view is frozen. Not rotating. No menu items.
This is due to Exception:
Exception in thread "AWT-EventQueue-0"
java.lang.ArrayIndexOutOfBoundsException: 3850
at org.jmol.shapebio.BioShape.setModelClickability(Unknown Source)
at org.jmol.shapebio.BioShapeCollection.setModelClickability(Unknown
Source)
at org.jmol.viewer.ShapeManager.setModelVisibility(Unknown Source)
at org.jmol.viewer.Viewer.setModelVisibility(Unknown Source)
at org.jmol.viewer.Viewer.renderScreenImage(Unknown Source)
at org.jmol.viewer.Viewer.renderScreenImage(Unknown Source)
The Line numbers correspond to the current svn version.
Christoph
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