Bugs item #3440852, was opened at 2011-11-21 12:36 Message generated for change (Comment added) made by hansonr You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=3440852&group_id=23629
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: File Input/Output Group: None Status: Closed Resolution: Out of Date Priority: 5 Private: No Submitted By: simon (simonplace) Assigned to: Bob Hanson (hansonr) Summary: x3d output has duplicated geometry Initial Comment: downloaded output example file from; http://jmol.sourceforge.net/demo/3dscenes/Ala.x3d and i notice that it has a lot of duplicated geometry, doesn't effect look but does slow down rendering. ---------------------------------------------------------------------- >Comment By: Bob Hanson (hansonr) Date: 2011-11-21 16:47 Message: DEF/USE is saving HUGELY on space. The files aren't meant to be edited by hand. Why not just create your own files from alanine. For example: load ==ALA write ala.x3d ---------------------------------------------------------------------- Comment By: simon (simonplace) Date: 2011-11-21 16:47 Message: so thinking bout it, maybe a switch, particularly with the old styte VRML output, for not using DEF/USE, would be really nice. ---------------------------------------------------------------------- Comment By: simon (simonplace) Date: 2011-11-21 16:44 Message: and, in a related point, with all the DEF/USE in there it makes it quite difficult to edit the files by hand, and i don't see much, if any, benefit in it, just directly using the built-in spheres and cylinders all the way through, would result in hardly any bigger file, but a MUCH more readable and editable one. ---------------------------------------------------------------------- Comment By: simon (simonplace) Date: 2011-11-21 16:37 Message: i did, i was reporting the problem to be helpful, actually all i did was remove all the small spheres in the block altogether, they all seemed redundant, as they are inside the big spheres, i did think they might be there for switching between visualisation forms, but not fully implemented or something, so i didn't report that. no particular file needed but a range would be nice, i dont really want to start editing them all, it defeats the point, i'll go look for x3d molecules on google again. ---------------------------------------------------------------------- Comment By: Bob Hanson (hansonr) Date: 2011-11-21 16:28 Message: If you need that particular file, just pull out the duplicates yourself. There can't be that many; it's only 200 lines, right? ---------------------------------------------------------------------- Comment By: simon (simonplace) Date: 2011-11-21 16:23 Message: OK. any way to know where to find a new x3d file? ---------------------------------------------------------------------- Comment By: Bob Hanson (hansonr) Date: 2011-11-21 16:17 Message: Oh, I see. These are the small spheres that cap the bonds. That was fixed some time ago; this file is old, that's all. name='generator' content='Jmol 11.9.23 2010-01-28' Ancient history! ---------------------------------------------------------------------- Comment By: simon (simonplace) Date: 2011-11-21 16:08 Message: what? 176 = 188 191 = 164 165 = 152 and those took 1 minute to find. ---------------------------------------------------------------------- Comment By: Angel Herraez (aherraez) Date: 2011-11-21 16:01 Message: Well, that's one. But not "a lot". I see no other. ---------------------------------------------------------------------- Comment By: simon (simonplace) Date: 2011-11-21 15:45 Message: try geometry at line 189 == that at line 201 ---------------------------------------------------------------------- Comment By: Bob Hanson (hansonr) Date: 2011-11-21 15:15 Message: I give up. I can't find the duplication.... ---------------------------------------------------------------------- Comment By: Angel Herraez (aherraez) Date: 2011-11-21 13:49 Message: I will have a look at it. Maybe it was produced with al old version of Jmol wich was not yet optimized. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=3440852&group_id=23629 ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d _______________________________________________ Jmol-developers mailing list Jmol-developers@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-developers
