I was able to successfully embed it in the SAGE web server. Now for lots of
code cleanup...
Jonathan
On Mar 20, 2012, at 7:43 PM, Robert Hanson wrote:
> OK, so I definitely learned something!
>
> On Tue, Mar 20, 2012 at 5:48 PM, Jonathan Gutow <[email protected]> wrote:
> Bob,
>
> You did it! My preliminary tests show it works. I have to do some
> modifications to get it embedded in Sage, but I think it will work fine.
>
> Thanks,
> Jonathan
>
> On Mar 19, 2012, at 9:53 PM, Robert Hanson wrote:
>
>> OK, Jonathan. I think I found the problem. Please try what I just checked in
>> -- do a build, and then use jmolData.jar instead of jmol.jar.
>>
>> Formerly:
>>
>> JmolData.jar -s foo.spt
>>
>> execute the script foo.spt with absolutely no graphics and no rendering,
>> including no image creation
>>
>> now:
>>
>> JmolData.jar -s foo.spt
>>
>> execute the script foo.spt still with rending for image creation, just
>> not for screen display
>>
>> Jmoldata.jar -n -s foo.spt
>>
>> as before, now for performance enhancement, no graphics of any kind.
>>
>> Let's see how that works.
>>
>> Bob
>>
>>
>> On Mon, Mar 19, 2012 at 8:30 PM, Robert Hanson <[email protected]> wrote:
>> If awt is not there, you are out of luck. But with the -n flag there is no
>> creation of Display. But there might be a reference to it. Let me see. Based
>> on this discussion:
>> http://java.sun.com/developer/technicalArticles/J2SE/Desktop/headless/ we
>> should be able to do it.
>>
>> Bob
>>
>>
>> On Mon, Mar 19, 2012 at 6:06 PM, Jonathan Gutow <[email protected]> wrote:
>> Bob,
>>
>> Thanks for trying...Your changes definitely reduce the error messages, but
>> the application is still looking for screen dimensions somewhere in the tree
>> after entering JmolPanel. It is making a call to the awt package. I'm
>> suspicious this is all associated with the allocation of a Display near line
>> 242 in JmolPanel.
>>
>> I've got a solution for Sage, but we should keep picking at this as more
>> people would be able to use Jmol as a server side image generator. Some
>> people really don't like running a GUI on their servers.
>>
>> Jonathan
>> On Mar 19, 2012, at 3:51 PM, Robert Hanson wrote:
>>
>>> Could be I'm wrong.Try what I just checked in. Be sure to use the
>>>
>>> -ions t.spt
>>>
>>> option (silent/no console/no graphics)
>>>
>>> You won't get THAT error. but will it create an image? I used this script:
>>>
>>> load $tylenol
>>> write image 300 300 t.png
>>>
>>>
>>> Bob
>>>
>>>
>>> On Mon, Mar 19, 2012 at 7:55 AM, Gutow, Jonathan H <[email protected]> wrote:
>>> I dug a little and agree it would be a significant undertaking to make the
>>> image generation work without the GUI. That said, we might want to put
>>> that on a long term to-do list.
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Professor of Chemistry
>>> St. Olaf College
>>> 1520 St. Olaf Ave.
>>> Northfield, MN 55057
>>> http://www.stolaf.edu/people/hansonr
>>> phone: 507-786-3107
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>> ------------------------------------------------------------------------------
>>> This SF email is sponsosred by:
>>> Try Windows Azure free for 90 days Click Here
>>> http://p.sf.net/sfu/sfd2d-msazure
>>> _______________________________________________
>>> Jmol-developers mailing list
>>> [email protected]
>>> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>>
>>
>> Dr. Jonathan H. Gutow
>> Chemistry Department [email protected]
>> UW-Oshkosh Office: 920-424-1326
>> 800 Algoma Boulevard FAX:920-424-2042
>> Oshkosh, WI 54901
>> http://www.uwosh.edu/facstaff/gutow
>>
>>
>> ------------------------------------------------------------------------------
>> This SF email is sponsosred by:
>> Try Windows Azure free for 90 days Click Here
>> http://p.sf.net/sfu/sfd2d-msazure
>> _______________________________________________
>> Jmol-developers mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>>
>>
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>> ------------------------------------------------------------------------------
>> This SF email is sponsosred by:
>> Try Windows Azure free for 90 days Click Here
>> http://p.sf.net/sfu/sfd2d-msazure
>> _______________________________________________
>> Jmol-developers mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>
> Dr. Jonathan H. Gutow
> Chemistry Department [email protected]
> UW-Oshkosh Office: 920-424-1326
> 800 Algoma Boulevard FAX:920-424-2042
> Oshkosh, WI 54901
> http://www.uwosh.edu/facstaff/gutow
>
>
> ------------------------------------------------------------------------------
> This SF email is sponsosred by:
> Try Windows Azure free for 90 days Click Here
> http://p.sf.net/sfu/sfd2d-msazure
> _______________________________________________
> Jmol-developers mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>
>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> ------------------------------------------------------------------------------
> This SF email is sponsosred by:
> Try Windows Azure free for 90 days Click Here
> http://p.sf.net/sfu/sfd2d-msazure
> _______________________________________________
> Jmol-developers mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-developers
Dr. Jonathan H. Gutow
Chemistry Department [email protected]
UW-Oshkosh Office: 920-424-1326
800 Algoma Boulevard FAX:920-424-2042
Oshkosh, WI 54901
http://www.uwosh.edu/facstaff/gutow
------------------------------------------------------------------------------
This SF email is sponsosred by:
Try Windows Azure free for 90 days Click Here
http://p.sf.net/sfu/sfd2d-msazure
_______________________________________________
Jmol-developers mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-developers
