Are you doing this in eclipse? Or using Jmol.jar? Are you doing the compiling?
Maybe you are not getting clean compiling. Please try it at
http://chemapps.stolaf.edu/jmol/docs/examples-12/simple2.htm You can just
drag drop files into that.
Sent from my stupid iphone
On May 20, 2012, at 3:52 PM, Andrew Long <andrew.long.3...@gmail.com> wrote:
> I've attached the azide that also seems to cause this with just the
> isosurface molecular.
>
> On Sun, May 20, 2012 at 5:49 PM, Andrew Long <andrew.long.3...@gmail.com>
> wrote:
> yep is that not happening with you?(i haven't added in your recent patch)
>
>
> On Sun, May 20, 2012 at 5:46 PM, Robert Hanson <hans...@stolaf.edu> wrote:
> so start over with me. I didn't do any fix there. I just read the file. So
> let's just do this again.
>
> load methylisocyanate.mol2
> isosurface molecular
>
> that by itself gives you a fragmented surface?
>
> Bob
>
>
> On Sun, May 20, 2012 at 3:34 PM, Andrew Long <andrew.long.3...@gmail.com>
> wrote:
> Awesome Thanks again. The exact commands i used was.....
>
> load filename.mol2
> isosurface molecular
> dots //for comparison.
>
> The dots command seems to lay out the surface perfectly but the isosurface
> command seems to have issues with the linear hetero atoms. I recreated this
> in the stock binary version. 12.2.22.
>
> and just to check in with my isosurface project and I've managed to produce
> some rather excellent pictures from it.
>
> http://imgur.com/zbcFi
>
> this is ~800 data points upscaled to 6200 vertexs using a radial weighted
> average using a gaussian function as the weighting function.
>
> On Sun, May 20, 2012 at 5:16 PM, Robert Hanson <hans...@stolaf.edu> wrote:
> ah -- it's not magic! Thanks, Angel...
>
>
> On Sun, May 20, 2012 at 2:53 PM, Angel Herráez <angel.herr...@uah.es> wrote:
> I forwarded it from the admin control page. The message was stopped there due
> to its large
> attachment
>
>
> On 20 May 2012 at 14:23, Robert Hanson wrote:
>
> >
> > Andrew -- don't worry about the bounce. I got it. (Funny -- I hadn't
> > realized that since I see the
> > bounce reports anyway, anyone can send me large files by this list!)
>
>
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> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
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>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> ------------------------------------------------------------------------------
> Live Security Virtual Conference
> Exclusive live event will cover all the ways today's security and
> threat landscape has changed and how IT managers can respond. Discussions
> will include endpoint security, mobile security and the latest in malware
> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
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>
>
> <methylazide.mol2>
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