>
> > Jmol.js includes not just functions for building Jmol applets, but also
> > buttons, checkboxes, etc. linked up to a Jmol applet on the page. Perhaps
> > the plugin could implement these functions in some way, as in...
> >
> > $('#jmolButton').jmolButton();
> This is also one of the things that I'm actually trying to avoid.
Your example makes good sense. It also helps keep the plugin light, which I
thought about after my first message. Concerning your search for
information about external methods, this is probably your best resource
(aside from Bob Hanson himself):
http://chemapps.stolaf.edu/jmol/docs/
Cheers, Mike
---
Mike Evans
Organic Chemistry Graduate Student, Moore Group
University of Illinois, Urbana-Champaign
On Tue, Jul 10, 2012 at 2:40 PM, Gusts Kaksis <gusts.kak...@gmail.com>wrote:
> Hi,
>
> It's nice to see some response. :) But first things first.
>
> > Jmol.js includes not just functions for building Jmol applets, but also
> > buttons, checkboxes, etc. linked up to a Jmol applet on the page. Perhaps
> > the plugin could implement these functions in some way, as in...
> >
> > $('#jmolButton').jmolButton();
>
> This is also one of the things that I'm actually trying to avoid. Let
> me show you an example. Let's say you have a HTML code that looks like
> that:
>
> <p>This is some description about what is going to happen when you
> click <a href="/some_molecule.pdb" id="magic">here</a>.</p>
>
> So you add to your javascript file somewere in jQuery's
> $(document).ready() part a line:
>
> $('#magic').click(function(e){
> e.preventDefault(); // disable default click action
> $('#my-jmol-viewer').jmol('load ' + $(this).attr('href')); // or any
> other command
> });
>
> See what I've done here? First time you call my jmol plugin on some
> placeholder <div>, it gets replaced with a Jmol applet object. Next
> time you can send direct script messages to it. Also if there is no
> JavaScript a client can download pdb file directly, and we don't
> interrupt his user experience on the web.
>
> Now even more magic:
>
> $(document).ready(function(){
> // Initialize Jmol with jMol when document has loaded
> $('#my-jmol').jmol({
> // Some settings
> onLoad : function(url){
> // when the molecule has been loaded, we set the page on fire
> $('#magic').parent().html('Tadaaa!');
> }
> });
> $('#magic').click(function(e){
> e.preventDefault(); // disable default click action
> $('#my-jmol-viewer').jmol('load /some_molecule.pdb'); // or any
> other command
> });
> });
>
> > I would also be interested in setting Jmol parameters thusly:
> >
> > $('#Jmolapplet').jmol({ parameter: 'bondmodeor', value: true });
> >
> > In my fork, I've added a parameters object to _defaults that contains all
> > the Jmol parameters as of 12.2.10; you might find that a useful
> reference. I
> > also added a simple bit of code to _proc that allows one to set Jmol
> > parameters using the above syntax.
> >
> > https://github.com/mevans86/jMol
>
> Oh, nice, this should be sorted out a bit, but it's nice to see. I'll
> look more into that tomorrow.
>
> --
> Gusts Kaksis
> Web Developer
>
>
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