Bugs item #3604846, was opened at 2013-02-15 03:21 Message generated for change (Comment added) made by rhuehne You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=3604846&group_id=23629
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Rolf Huehne (rhuehne) Assigned to: Nobody/Anonymous (nobody) Summary: show pdbheader freezes Jmol 13.1.12 Initial Comment: When I run the command "show pdbheader" in Jmol 13.1.12 () after loading a PDB entry file it freezes (applet and application) with the following error message: QueueThread0_55 exception java.lang.ArrayIndexOutOfBoundsException: -1 System: OpenSuse 11.4, JRE version 1.6.0_37-b06 Java HotSpot(TM) 64-Bit Server VM ---------------------------------------------------------------------- >Comment By: Rolf Huehne (rhuehne) Date: 2013-02-18 04:16 Message: Thanks Bob, it works with the new version. I didn't expect a dependency on a specific file, because the command worked with the same file in an SVN build of 13.1.10 and I wasn't really aware of the file modification (see below). The file is the asymmetric unit file of PDB entry 1DEH, with 4 small extra models inserted before the 'MASTER' line: http://jenalib.fli-leibniz.de/cgi-bin/idb_send.pl?CODE=1deh&MODE=complete-asymmetricSNP-DIFFRACTION&MIME=HTML ---------------------------------------------------------------------- Comment By: Bob Hanson (hansonr) Date: 2013-02-15 10:25 Message: please try http://chemapps.stolaf.edu/jmol/Jmol-13.zip and let me know if the problem persists. If so, I'll need to know the PDB ID or get the offending file itself. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=3604846&group_id=23629 ------------------------------------------------------------------------------ The Go Parallel Website, sponsored by Intel - in partnership with Geeknet, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials, tech docs, whitepapers, evaluation guides, and opinion stories. Check out the most recent posts - join the conversation now. http://goparallel.sourceforge.net/ _______________________________________________ Jmol-developers mailing list Jmol-developers@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-developers
