at 10.49a EDT on 2004 February 16 Monday Miguel Howard said:

> > if  I write a Chime move command that includes a -Y value,
> >
> >    move 0 0 0 0 0 -50 0 0 2.0
> >
> > that moves the molecule up.  I have always attributed this to the axes
> > orientation.
> 
> That is correct.
> 
[...]

> 
> > if the Y axis is 'flipped' in Jmol,
> > the same move command would now move the molecule down (which seems more
> > logical to me). is this true?
> 
> Yes, that is true.
> 
> 
[...]
> 
> However, in your previous message I got the impression that you wanted to
> switch the axes mode during execution of a script. In practice, I do not
> think this would work. You would need to pick an orientation and stick
> with it. In large part because of rotations ... something we need to
> discuss once we get this *small* issue of axis orientation settled ;-)
> 
:-(

I will bring up the issue again in the context of the rotations - since that
is where my thoughts are leading!


regards,

:tim

-- 
timothy driscoll
molvisions - molecular graphics & visualization
<http://www.molvisions.com/>
usa:north carolina:wake forest


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