On Friday 31 December 2004 17:07, Bob Hanson wrote: > Nice to see http://jmol.sourceforge.net/docs/JmolUserGuide/ch04.html > (which comes up from Googling "applet callback jmol") and is a nice > rendition of http://www.stolaf.edu/people/hansonr/jmol/docs > > Stated there, though: > > Things that explicitly do *not* work are protein rendering formats such as > ribbons, cartoons, strands, etc. Jmol does not perform lighting and surface > rendering on the fly, so settings such as ambient, shadows, specular and > specpower are not available. Finally, Jmol does not have a true 3D graphics > engine, so renderings of intersecting surfaces are not handled properly. > This occurs when Atoms are rendered with larger vanderWaals percentages > (such as 50% or more). > > Are these statements still true?
No. I've removed this paragraph. Thanx for noting. > Otherwise, this looks good, Egon. Thanx, I'm glad you like it. It's all DocBook based, so it's mostly off the shelf stuff. > ------------- > I found a couple of errors in defs.js and have updated that. You should run > the xml-generator again at some point. > http://www.stolaf.edu/people/hansonr/jmol/docs/?xml Done. > Also, two corrections I think for the xml generation: > > <cmdexamples> should not be prefaced with the word "Examples". Sorry about > that, I guess they really aren't "examples" but more like "options". In any > case, no prefacing word is necessary -- certainly not "Examples". Fixed. > <cmdscript> is really the designation for "Examples" and should be prefaced > as such. (Right now these are being ignored.) The <cmdscript> syntax is not very practical for me... there is no <br> equivalent in DocBook... could you make this something like: <cmdscriptlist> <cmdscript>select[HIS]92.D<br/>color atoms green</cmdscript> <cmdscript>select carbon<br/>color atoms white</cmdscript> <bla/> </cmdscriptlist> Instead of: <cmdscript><br /> select [HIS]92.D<br /> color atoms green<br /> select carbon<br /> color atoms white<br /> color bonds red<br /> select carbon<br /> color bonds white </cmdscript> (Or is this actually *one* script?) The <br/> in the above example I can convert into ';'... Thanx, Egon -- [EMAIL PROTECTED] PhD student on Molecular Representation in Chemometrics Radboud University Nijmegen http://www.cac.science.ru.nl/people/egonw/ GPG: 1024D/D6336BA6 ------------------------------------------------------- The SF.Net email is sponsored by: Beat the post-holiday blues Get a FREE limited edition SourceForge.net t-shirt from ThinkGeek. It's fun and FREE -- well, almost....http://www.thinkgeek.com/sfshirt _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
