Rick wrote: > Thanks for whatever changes you made in Jmol-10.00.05 > that fixed my problem from > a few weeks ago. I had XYZ files that caused crashes > with more than 33,000 > atoms. I've been working with some 50,000 atom files > with no trouble, but now > I've hit another barrier. > > An XYZ file with 132,000 atoms crashes with a different report: > > 566 robot% jmol indent.xyz > Warning: Cannot convert string "MetaCtrl<Key>Insert" to type > VirtualBinding > splash_image=jar:file:/u/home6/wagner/Applications/jmol-10.00.05/Jmol.jar!/org/openscience/jmol/images/Jmol_splash.jpg > using Smarter Model Adapter > (C) 2004 The Jmol Development Team > Jmol Version 10.00.05 2005/01/24 19:43 > java.vendor:Sun Microsystems Inc. > java.version:1.4.2_04 > os.name:Linux > User macros dir: /users/wagner/.jmol/macros > exists: false > isDirectory: false > FileManager.openFile(indent.xyz) > SmarterJmolAdapter:The Resolver thinks:Xyz > openFile(indent.xyz) 4339 ms > sequential bspt order > time to build bspf=3038 ms > bspt treeDepth=96 count=132553 > uncaught exception: java.lang.OutOfMemoryError > java.lang.OutOfMemoryError > > Another very similar file with 99,000 atoms works fine. Both are > attached.
Last line of this says 'OutOfMemoryError' This means that you ... ran out of memory. Pass a command line parameter to Java which says java -Xmx512m ... to allow the Java heap to grow up to 512 megabytes. I believe that you can pass this to the jmol script as well ... jmol -Xmx512m myHugeMolecule.??? Miguel ----- Open Source Molecular Visualization www.jmol.org [EMAIL PROTECTED] ----- ------------------------------------------------------- SF email is sponsored by - The IT Product Guide Read honest & candid reviews on hundreds of IT Products from real users. Discover which products truly live up to the hype. Start reading now. http://ads.osdn.com/?ad_ide95&alloc_id396&op=click _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
