I appreciate that Jmol (like Rasmol) allows one to turn HBonds on and
off (and make them stretch to the backbone or stop in mid-air) but
the decision about what is a hydrogen bond is made by the program
apparently. The data that I am displaying in my web pages is of small
hydrogen-bonded motifs in proteins, where the whole point is that
there are hydrogen bonds other than those that the program may regard
as standard. Indeed the motifs are so defined by the scientific
expert for whom I am putting the site together. Each motif has its
own rules for which atoms should be joined by Hbonds, so my question
is "are there any commands I can use to make Jmol display dotted
lines between the atoms I specify following these rules?".
David
--
_______________________________________________________________
David P.Leader, Biochemistry and Molecular Biology
Davidson Building, University of Glasgow, Glasgow G12 8QQ, UK
Phone: +44 41 330-5905 http://doolittle.ibls.gla.ac.uk/leader
_______________________________________________________________
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