On Oct 8, 2005, at 10:46 , Timothy Driscoll wrote:


On Oct 8, 2005, at 9:58 , Miguel wrote:






 Hello  i am looking forward to include Sequence Alignment in my
project.Can u please tell me how many types of Sequence Alignment are there and are on what format it done . I have heard that it is done on FASTA format and what are algorithms are generally used for doing it bye
 Huziafa




I am not a chemist nor bio-chemist.
I do not understand your question and cannot help.




FASTA is one file format that is often used to store sequence data; it is not an alignment method.


thanks to David Leader, I must correct my above statement: FASTA is an alignment method AND a file format. sorry 'bout that:

<http://fasta.bioch.virginia.edu/>

in fact, there are a lot of FAST variants (F, P, X, Y, ...).

regards,

tim
--
Timothy Driscoll
molvisions - see. grasp. learn.
<http://www.molvisions.com/>
earth:usa:virginia:blacksburg







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