I've been using jchempaint for a while to draw structures for my
chemistry tests, now I need to turn some of them in to 3d models and
I'm having some trouble. I've tried saving the file as a MDL MOL file
and CML files and then opening it in Jmol. There are two issues with
this that I haven't been able to figure out.
The first is the bond length seems really large in Jmol I'm having
trouble getting the files to look like a ball and stick model. The
second is the geometry isn't working, the models come out in a 2d
plane, is there some trick or script I need to run to get the
geometry right. I haven't been able to figure it out yet, any help
would be much appreciated.
I'm using the latest versions of all the apps in Mac OS X 1.4.3.
Aaron Glimme
Berkeley High School
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