> > Hi Francois > > What you need is to deactivate autobonding. > > On a previos post > http://sourceforge.net/mailarchive/message.php?msg_id=12416924 > Miguel sayed: > Jmol prerelease 10.00.21 is now available > It includes support for: > 2. "set autobond off" can be used before loading any file type to > prevent > auto-bonding. Explicit bonds with the file are retained > > This should fix your problem (I have not tested it)
I may have misunderstood his question, but I do not think that this is going to solve the problem for Francois. If any connectivity information is in the file then Jmol will not perform autobonding (with the exception of PDB files). If a file has no connectivity, then Jmol will perform autobonding. Francois indicated that his CML files have no connectivity information. If he uses 'set autobond off' then he will have only atoms, with no bonds at all. If Francois explicitly adds bonds to his CML files then Jmol will not add any additional bonds. 'set autobond off' was implemented for those people who want to draw pictures or clouds of points using xyz files ... basically for applications where people are not displaying molecules. Miguel ------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnk&kid3432&bid#0486&dat1642 _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
