On May 2, 2006, at 1:56 PM, Egon Willighagen wrote:

On Tuesday 02 May 2006 19:54, Frieda Reichsman wrote:
Can someone please remind me of how to prevent Jmol from producing
covalent bonds between neighboring atoms of different protein chains?
(In this case, the chains overlap each other due to alternate,
mutually exclusive conformations of the chains being present in the
same file).

Why aren't those on two separate models?

Egon


Hi Egon,

I could make them so. This is a pdb file in an animation series I am converting from Chime to Jmol, so it is a legacy file. Probably the chains were pasted into the pdb file for the purposes of this custom animation. If separate models is the way to go, I can do that. If there is a command to accomplish this objective, I would use it since technically it will be simpler than getting ahold of the pdb file in this particular case.

Frieda 

-- 
Cologne University Bioinformatics Center (CUBIC)
GPG: 1024D/D6336BA6


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Frieda Reichsman, PhD

Molecules in Motion

Interactive Molecular Structures

http://www.moleculesinmotion.com


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