[Jmol-users] Fwd: examples for altLocation

Eric Martz Tue, 16 May 2006 16:06:39 -0700

Here are some examples of PDB entries with altLocs, for the highestresolution entries in the PDB. These were kindly extracted by JaimePrilusky (http://bip.weizmann.ac.il/about/people.html) to assist in Jmoldevelopment. He is working on a comprehensive all-PDB list.


Interesting so far:


1R6J has A, B, C, D (four alternate locations!)

1J8G is mostly RNA, but all the altLocs are in HETATMs.

Presumably, altLocs will get scarcer as we go into lower resolution X-RAYresults.


-Eric

1ejg 831 atoms, Resolution: 0.54
A: ARG 9, ASN 15, ASP 6, GLU 6, ILE 30, LEU 13, PHE 11, PRO 26, THR 27,TYR 12, VAL 14B: ARG 9, ASN 15, ASP 6, GLU 6, ILE 43, PHE 11, PRO 13, SER 6, THR 31,TYR 12, VAL 14
C: ILE 10, SER  6, TYR 12

1j8g 674 atoms, Resolution: 0.61
A: HOH 22, NA  1, SPM  3
B: HOH 22, NA  1, SPM  3

1ucs 1260 atoms, Resolution: 0.62
A: ASN  2, GLU  3, LYS  2, MET 16
B: ASN  2, GLU  3, LYS  2, MET 16

1us0 3754 atoms, Resolution: 0.66
A: ALA 5, ARG 34, ASN 15, ASP 26, CYS 18, GLN 38, GLU 47, GLY 4, HIS 17,ILE 30, LEU 40, LYS 51, MET 8, PHE 32, PRO 20, SER 24, THR 21, TRP 14,TYR 16, VAL 14B: ALA 5, ARG 34, ASN 15, ASP 26, CYS 18, GLN 38, GLU 47, GLY 4, HIS 17,ILE 30, LEU 40, LYS 51, MET 8, PHE 32, PRO 20, SER 24, THR 21, TRP 14,TYR 16, VAL 14
C: SER  2

1yk4 1014 atoms, Resolution: 0.69
A: ARG 20, ASP 24, CYS 2, GLU 10, HOH 13, ILE 19, LYS 21, PRO 34, SER 12,TRP 2B: ARG 20, ASP 24, CYS 2, GLU 9, HOH 11, ILE 19, LYS 20, PRO 33, SER 10,TRP 2
C: SER 10

1r6j 964 atoms, Resolution: 0.73
A: ALA 5, ARG 11, ASN 3, ASP 16, CL 1, GLU 7, GLY 8, HIS 16, ILE 4,LYS 1, MET 10, PRO 7, SER 7, THR 17B: ALA 5, ARG 11, ASN 3, ASP 12, GLU 7, GLY 8, HIS 16, ILE 4, LYS 1,MET 10, PRO 7, SER 7, THR 17
C: ASP  3, HIS  5, SER  1
D: SER  1

1d8g 404 atoms, Resolution: 0.74
A: A 15, C 25, CA  1, G  2, HOH 13, T 24
B: A 15, C 25, CA  1, G  2, HOH 13, T 24

2b97 2339 atoms, Resolution: 0.75
A: ASP 12, GLN 22, LEU 52, LYS 36, THR 16
B: ASP  9, GLN 19, LEU 48, LYS 30, THR 14

1hje 247 atoms, Resolution: 0.75
A: CYS  2, ILE 20, LYS  3, NH2  3, PRO 18, SER  5
B: CYS  2, ILE 20, LYS  3, NH2  3, PRO 18, SER  5

3al1 679 atoms, Resolution: 0.75
A: ETA  8, GLU 40, HOH  9, LEU 28, LYS 69, MPD 22
B: ETA  8, GLU 36, HOH  9, LEU 26, LYS 62, MPD 22
C: GLU  9, HOH  3, LYS 16

1gci 4185 atoms, Resolution: 0.78
A: ARG 20, ASN 12, GLN 19, GLY 14, LEU 17, LYS 17, SER 60, THR 13
B: ARG 20, ASN 12, GLN 19, GLY 14, LEU 17, LYS 17, SER 60, THR 13
C: SER  4

1x6z 2523 atoms, Resolution: 0.78
A: ARG 18, CYS 10, GLU 18, LYS 23, MET  8, SER  5, THR  8, VAL 10
B: ARG 18, CYS  5, GLU 18, LYS 23, MET  8, SER  5, THR  8, VAL 10
C: CYS  5

1pq7 3726 atoms, Resolution: 0.80
A: ARG 11, ASN 14, CYS 30, GLN 17, GLU 15, PRO  3, SER 41, THR 14
B: ARG 11, ASN 14, CYS 30, GLN 17, GLU 15, PRO  3, SER 41, THR 14

1iua 765 atoms, Resolution: 0.80
A: HIS  6, HOH  7, ILE  3, LYS  4, MET  3, PRO 10
B: HIS  6, HOH  7, ILE  3, LYS  4, MET  3, PRO 10

1w0n 1178 atoms, Resolution: 0.80
A: ASN 11, GLU  4, ILE  9, LYS  4, SER  2, THR  7, TYR  7, VAL  7
B: ASN 11, GLU  4, ILE  9, LYS  4, SER  2, THR  7, TYR  7, VAL  7
C: SER  1

1fy5 3808 atoms, Resolution: 0.81
A: ARG 54, ASN 22, ASP 12, CYS 25, GLN 11, GLU 15, GLY 35, ILE 26, PHE 20,PRO 9, SER 56, THR 30, TYR 7, VAL 20B: ARG 36, ASN 22, ASP 12, CYS 23, GLN 11, GLU 15, GLY 35, ILE 26, PHE 20,PRO 9, SER 54, THR 30, TYR 6, VAL 20
C: ARG 18, CYS  1

1gdn 4132 atoms, Resolution: 0.81
A: ALA 30, ARG 60, ASN 36, ASP 36, CYS 25, GLN 11, GLU 15, GLY 50, ILE 26,LEU 38, PHE 20, PRO 23, SER 104, THR 44, TYR 23, VAL 63B: ALA 30, ARG 60, ASN 36, ASP 36, CYS 23, GLN 11, GLU 15, GLY 49, ILE 26,LEU 38, PHE 20, PRO 23, SER 98, THR 44, TYR 21, VAL 62
C: CYS  1

1fn8 3942 atoms, Resolution: 0.81
A: ARG 57, ASN 38, ASP 24, CYS 22, GLN 13, GLU 15, GLY 36, ILE 28, LEU 3,PHE 20, PRO 10, SER 86, THR 46, TYR 25, VAL 38B: ARG 36, ASN 36, ASP 24, CYS 22, GLN 11, GLU 15, GLY 35, ILE 26, LEU 2,PHE 20, PRO 9, SER 76, THR 44, TYR 21, VAL 36
C: ARG 18, CYS  1

1fy4 4161 atoms, Resolution: 0.81
A: ALA 40, ARG 66, ASN 36, ASP 36, CYS 25, GLN 11, GLU 15, GLY 57, ILE 45,LEU 57, PHE 20, PRO 23, SER 97, THR 44, TYR 22, VAL 78B: ALA 40, ARG 66, ASN 36, ASP 36, CYS 23, GLN 11, GLU 15, GLY 56, ILE 45,LEU 57, PHE 20, PRO 23, SER 95, THR 44, TYR 21, VAL 78
C: CYS  1

1nwz 1301 atoms, Resolution: 0.82
A: ALA 5, ASN 8, ASP 16, GLN 13, GLU 9, GLY 12, HOH 10, LEU 8, LYS 21,MET 4, PHE 11, SER 12, TYR 32, VAL 7B: ALA 5, ASN 8, ASP 16, GLN 13, GLU 9, GLY 12, HOH 10, LEU 8, LYS 21,MET 4, PHE 11, SER 12, TYR 32, VAL 7
1n55 2661 atoms, Resolution: 0.83
A: ARG 7, ASN 8, ASP 8, CYS 2, GLN 10, GLU 24, GLY 4, GOL 6, HOH 18,ILE 4, LEU 4, LYS 27, PGA 9, PRO 5, SER 12, THR 12, VAL 9B: ARG 7, ASN 8, ASP 8, CYS 2, GLN 10, GLU 24, GLY 4, HOH 19, ILE 4,LEU 4, LYS 27, PGA 9, PRO 5, SER 12, THR 12, VAL 9
C: ASN  4, GLU 10, SER  2, VAL  3

1dpl 650 atoms, Resolution: 0.83
A: A  8, C 19, G 12
B: A  8, C 19, G 12


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[Jmol-users] Fwd: examples for altLocation

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