try putting the initialization function back in as
jmolInitialize(".", "JmolAppletProto.jar")
You have all the capitalization exact in the file name, right? That's
been problems for some people, because
your hard drive will accept "jmolappletproto.jar" for
"JmolAppletProto.jar" but the web server won't.
Bob
Steven R. Spilatro wrote:
>Bob,
>Oh, I guess I was confused because it appears as jmolappletproto.jar
>in your directory, but as as a zip folder on my computer. Seems as
>though I still have something wrong... I have the jmolappletproto.jar
>and jmol-new in the same directory as the following simple html file.
>
><html>
><head>
><script language="javascript" src="Jmol-new.js"></script>
></head>
><body>
><script language="javascript">
> jmolApplet(500)
></script>
></body>
></html>
>
>But, when I open the file, I get an "jmolapplet0 notinitied" message,
>and then a "downloading jmolapplet" message. I'm assuming that it
>doesn'tmatter that I have the older jmol files in the same place.
>Steve
>
>
>
>
>
>
>>Message: 7
>>Date: Tue, 06 Jun 2006 12:59:03 -0500
>>From: Bob Hanson <[EMAIL PROTECTED]>
>>Subject: Re: [Jmol-users] installing jmolappletproto.jar
>>To: [email protected]
>>Message-ID: <[EMAIL PROTECTED]>
>>Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>>
>>Steve, a Jar file is a zip file, so that would be correct. Just save it
>>to your hard drive. Bear with us; we're just not creating full ZIP files
>>yet.
>>
>>To use the prototype, you have two options:
>>
>>1) Quick download; more work:
>>
>> a) download JmolAppletProto.jar and Jmol-new.js
>> b) change your project files to point to Jmol-new.js instead of Jmol.js
>> c) comment out your jmolInitialize() statement if it currently reads:
>>
>> jmolInitialize(".")
>>
>> or change it to read
>>
>> jmolInitialize("<whatever directory>", "JmolAppletProto.jar")
>>
>> This is what I do, because I can always change those two lines back in
>>order
>> to compare results.
>>
>>or
>>
>>2) Slower download; Make no changes in your HTML files:
>>
>> a) save copies of the 10.2 jar and js files somewhere
>> b) download JmolApplet0-6.jar(s) individually along with Jmol-new.js
>> c) replace the 10.2 jars and Jmol.js with those files
>>
>>Bob Hanson
>>
>>
>>
>>Steven R. Spilatro wrote:
>>
>>
>>
>>>I'm a rookie to jmol so your patience is appreciated. I want to take
>>>advantage of new functions I see described for jmol-new, but have
>>>been unsuccessful getting it set up. I'm stumped at step-one:
>>>down-loading jmolappletproto.jar
>>>
>>>
>>>from http://www.stolaf.edu/people/hansonr/jmol/test/proto/ gives me
>>
>>
>>>a zip file, not the jar. ; what am I doing wrong?
>>>Steve
>>>
>>>Dr. Steven R. Spilatro
>>>Chair, Department of Biology
>>>Marietta College
>>>
>>>
>>>
>>>
>>>_______________________________________________
>>>Jmol-users mailing list
>>>[email protected]
>>>https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>>
>>>
>>
>>
>>------------------------------
>>
>>Message: 8
>>Date: Tue, 06 Jun 2006 20:02:20 +0200
>>From: "Angel Herraez" <[EMAIL PROTECTED]>
>>Subject: Re: [Jmol-users] 10.x bugs in firefox - applet.script is not
>> afunction
>>To: [email protected]
>>Message-ID: <[EMAIL PROTECTED]>
>>Content-Type: text/plain; charset=US-ASCII
>>
>>Hi Michael
>>
>>The situation may be the same as one quite familiar to me, though
>>still not narrowed so I can define it in written form. So, I cannot
>>be specific, but will give you some clues:
>>The "applet.script is not a function" error is little informative; I
>>have had it when there are errors in javascript, when the applet
>>hasn't had the time to load, when I mix javascript and Jmol scripts
>>and they are not in synch (remember they run in parallel, not in
>>order: if you try to give Jmol instructions by means of javascript
>>and it has not yet processed its own, you get unpredictable results
>>and hang-ups)...
>>So, my advice: check carefully your html and javascript code;
>>separate/simplify the instructions to see where the blocking is.
>>Sometimes, just inserting an alert() command close to the site of the
>>problem solves it, removing the alert brings it back: that is a clear
>>hint of one of those "not in synch" situations I was trying so poorly
>>to define.
>>
>>
>>
>>>I have observed, that when I browse jmol web from localhost
>>>(jmolInitialize secure flag set to 1), the buttons work, but when
>>>browsed through web server, it does not.
>>>
>>>
>>This might be due to slower loading of the applet when in web server
>>(mentioned above), making the error to surface.
>>
>>(I regularly use Firefox on Windows; some problems also apply to
>>Microsoft IE but Ff may have higher incidence)
>>
>>I gather Bob Hanson has worked out a way to delay javascript until
>>Jmol is finished (in his prototype). This will be VERY useful, but I
>>haven't tested it yet since I am trying to finish materials that must
>>go with an official release of Jmol.
>>
>>Hope it helps,
>>
>>
>>
>>
>>------------------------------
>>
>>Message: 9
>>Date: Tue, 06 Jun 2006 20:42:59 +0200
>>From: Nicolas Vervelle <[EMAIL PROTECTED]>
>>Subject: Re: [Jmol-users] NullPointerException when running Jmol.jar
>>To: [email protected]
>>Message-ID: <[EMAIL PROTECTED]>
>>Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>>
>>Hi,
>>
>>Do you remember with which version you successully implemented it before ?
>>A lot of things have changed since version 10.00.
>>
>>Do you have a development environment set up with Eclipse ?
>>If not, could you install one and make a few tests ?
>>( http://wiki.jmol.org/index.php/Eclipse )
>>
>>Currently the line 98 of JmolResourceHandler is:
>> URL imageUrl =
>>this.getClass().getClassLoader().getResource(imageName);
>>
>>Could you replace it by:
>> Class tmpClass = this.getClass();
>> System.out.println("tmpClass: " + (tmpClass != null ?
>>tmpClass.getName() : "null"));
>> ClassLoader tmpClassLoader = tmpClass.getClassLoader();
>> System.out.println("tmpClassLoader: " + (tmpClassLoader != null ?
>>tmpClassLoader.getClass().getName() : null));
>> URL imageUrl = tmpClassLoader.getResource(imageName);
>>
>>and tell us which line is throwing an exception and what is the output ?
>>
>>I suspect the problem is with the ClassLoader since you are using your
>>own ClassLoader.
>>
>>Nico
>>
>>Joanna Sharman wrote:
>>
>>
>>>Hello,
>>>
>>>I want to run Jmol.jar from within another java application. I've
>>>successfully implemented this before, but suddenly I'm getting a
>>>NullPointerException in the class JmolResourceHandler, specifically in
>>>the getIcon method. I didn't change anything in my code so I don't
>>>know why this error has suddenly appeared. I don't even know if the
>>>cause lies within Jmol or with the Eclipse version I'm using, but if
>>>anyone has seen this before perhaps they can help me. If I just try
>>>and open Jmol.jar by clicking on the icon it opens normally.
>>>
>>>I'm using a couple of classes I borrowed as examples from the sun java
>>>tutorial to run Jmol.jar by passing a URL pointing to the jar file to
>>>the class JarRunner. I've copied the two classes below the stack trace
>>>for the error.
>>>
>>>Thanks in advance for any help!
>>>Joanna
>>>
>>>
>>>_______________________________________________
>>>Jmol-users mailing list
>>>[email protected]
>>>https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>>
>>>
>>>
>>>
>>
>>
>>------------------------------
>>
>>
>>
>>------------------------------
>>
>>_______________________________________________
>>Jmol-users mailing list
>>[email protected]
>>https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>>End of Jmol-users Digest, Vol 1, Issue 1128
>>*******************************************
>>
>>
>
>Dr. Steven R. Spilatro
>Chair, Department of Biology
>Marietta College
>
>
>
>
>_______________________________________________
>Jmol-users mailing list
>[email protected]
>https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
