Bob,

I think a few modifications can prevent the Jmol window to open. Can you 
try and test them ?
I tested them with a simple command line (getting measures), and it worked.

Here's what I think is needed:

org.openscience.jmol.app.Jmol:
getJmol(): we should call frame.show() only if haveDisplay is true
Jmol(): maybe (not sure), we should create the atomSetChooser only if 
haveDisplay is true

org.jmol.viewer.Viewer:
requestRepaintAndWait(): we should call repaintManager only if 
haveDisplay is true.

Nico


Note: even if the Jmol window is not displayed, it may not work on a 
Unix machine without an X server.
I know that some Java methods require that an X server is there, even if 
nothing needs to be displayed (a JVM bug IMHO)
That would be something to test.
If it doesn't work, it may probably work using a virtual server (see Xvfb)


[EMAIL PROTECTED] wrote:
>>> A little Jmol window opened and closed itself after a while. The output
>>> file afterwards contained the measurement list.
>>>
>>>  
>>>
>>>       
>> that is the correct behavior. I don't know how to hide that window, and 
>> I'm not sure I want to. Is that OK?
>>
>> If someone can figure out how to make this totally no display, I'm all 
>> for it. That's past my ability.
>>     
>
> I will take a look at it if I find some time this evening (still at the 
> office :( )
>
> Nico
>
>
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