Hi all,

Unsure if this is the correct way to pose this, but:

 Is there a way to select amino acids in a protein, using jmol?

I've been pawing at it for a while, not seeing the control, and the jave
is very large and complex to me, a poor miserable biologist. Perhaps there
is a way to select and shade whole stretches of protein?

E.g.

Load Hemagluttinin from InfluenzaA/Greece/A/1.99 pdb file
Select residues all
spacefill
shade cyan
select residues 2-15 (an immune epitope)
shade magenta

?

Hoping this is not far out of reach...as it is, the chemical display and
atom by atom shading is more direct seeming to me, but use with protein is
not so clear.

Any help is appreciated. We'd like to develop with you all if this is
possible!

Best,

Chris Larsen, Ph.D.
NIAID Bioinformatics Resource Centers
Rockville MD



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