Herráez Sánchez Angel wrote:
>I found a funny behaviour of "rockets" on 2hhd.pdb, chain C
>
>Try this:
>
>load 2hhd.pdb;
>
>restrict *:C;
>
>select all; spacefill off;
>
>select hetero and not solvent; spacefill on;
>
>select protein; cartoons on; rockets on;
>
>
>
I'm not seeing what you want me to see.
load 2hhd.pdb;display *:C;center visible;
restrict none;select hetero and not solvent;wireframe on
select protein;cartoons on;rockets on
select 74;color yellow
moveto 1.0 { 494 537 684 93.7} 200.0 {-0.3075999 23.937828 48.634956} 52.4;
This looks perfectly fine to me. The turn at 74 is there.
I got my 2hhd.pdb file from the AJAX connection at
http:www.stolaf.edu/academics/chemapps/jmol/docs/examples-11/new.htm
Do we have the same files?
Bob
>
>
>There are two stretches of alpha helix separated by a turn around residue nr.
>74. Jmol (both 10.2 and 10.9.87) is assigning an alpha secondary structure to
>the turn. As a consequence, instead of two rockets one gets only one, avoiding
>the full path of the two helices and crossing right through the heme group.
>
>I know rockets are not meant to be too faithful to structure, but this is
>extreme. Very unpedagogical!
>
>
>
>
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-------------------------------------------------------------------------
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with pre-integrated technology to make your job easier
Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
_______________________________________________
Jmol-users mailing list
[email protected]
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