OK, you can check it out. What I have up at St. Olaf is the development trunk 11.1, not 11.0, but at least you can see how it works and tell me if it is OK. I've made the correction in 11.0 as well, but it may not show up at Sourceforge for a bit.
Feel free to play with navigation mode as well -- not trivial, but maybe fun. Just set navigationMode and then play with the cursors. Charles Xie says he likes set cameraDepth 0.5 I'm not so sure.... see the JAR files in http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-11 Bob Angel Herraez wrote: >In former versions of Jmol, the cartoon for nucleic acids had "sidechain" >sticks coming out from the midpoint between phosphorus atoms towards the >base. >11.0.RC3 (likely started before this) draws the sticks from the phosphorus >itself. I have no objection to that, but the wrong phosphorus is being >associated, which belongs to the neighbour residue. > >For ex., on 140d.pdb, base in [G]20:B in linked to phosphorus in [C]21:B > >As a consequence: > >3'-terminal P is associated to two bases > >5'-terminal P is associated to no bases (and, if the 5'-residue has no P as in >140d, the residue is colored red instead of orange). The 5'-terminal base is >not drawn as cartoon. > >This seems general, it happens in other molecules such as 255d.pdb, >5tra.pdb, 2zna.pdb > >To see it better, use >select all; cartoon on; spacefill off; select _P; spacefill 50%; select all > > > >------------------------------------------------------------------------- >Take Surveys. Earn Cash. Influence the Future of IT >Join SourceForge.net's Techsay panel and you'll get the chance to share your >opinions on IT & business topics through brief surveys - and earn cash >http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys - and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
