Hi Steffi

This is impossible -or very limited- due to security restrictions 
imposed by Java. I never remember exactly what can be done; maybe if 
you use the "signed" version of the applet you can, but I think even 
so it is not possible. With the unsigned applet, using the webpage 
and applet in your hard disk, you can open files that are located 
below the applet in the folder structure, but not outside it. With 
the signed applet, you may access files from other folders -or not-. 
Using the webpage from a server, I think you are limited to the 
server.

For more details, read
http://wiki.jmol.org/index.php/Jmol_Applet_Deployment_Local
http://jmol.sourceforge.net/jslibrary/index.en.html#jmolInitialize
http://molvis.sdsc.edu/fgij/datameth.htm




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