Hi Harris

Although others had posted more detailed solutions to your question, 
I think the problem you had with

> jmolApplet(300, 'load "fileset" "1BZ8.pdb" "1C26.pdb"; select */1;');
> It shows 1BZ8 structure. But if i do : 
> 
> 
> jmolApplet(300, 'load "fileset" "1BZ8.pdb" "1C26.pdb"; select */2;');
> It shows nothing.. .is it normal ? 


is that, when several files are loaded, they are assigned frame/model 
numbers 1001, 2001, not 1, 2. So, in your examples:
jmolApplet(300, 'load "fileset" "1BZ8.pdb" "1C26.pdb"; select 
*/1001;');  # first model in 1BZ8.pdb
jmolApplet(300, 'load "fileset" "1BZ8.pdb" "1C26.pdb"; select 
*/2001;');  # first model in 1C26.pdb

The new syntax in Jmol 11.1.x allows to use the more clear "file 1", 
"file 2" and "1.1", "1.2", "2.1"   identifiers, which have already 
been recommended by others.

HTH


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