sorry, I forgot the link:
http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-11/show.htm?data/timnav.spt
Bob Hanson wrote:
> Q: What do you get when you combine?
>
> - isosurface WITHIN x.xx [some point or atom] # just now added
>
> - translucent surfaces
>
> - navigation
>
>
> A: A guided tour of a protein binding site.
>
> The key commands are:
>
> isosurface s1 within 10.0 (atomno=185) sasurface colorscheme rwb color
> absolute 0 20 map property temperature translucent 0.2;# ({0:2180})
> ({1749:1758 1760:2180})
>
> isosurface s2 within 8.0 (atomno=433) sasurface colorscheme rwb color
> absolute 0 20 map property temperature translucent 0.2;# ({0:2180})
> ({1749:1758 1760:2180})
>
> draw arrow1 ARROW {18.50816 -5.9783783 6.6065865} {22.577888 2.2955093
> 17.283516} {36.745804 12.123276 29.579498} {37.168575 15.102219
> 37.04515};
> draw off;
>
> navigate 10 PATH $arrow1
>
>
> The arrow was set up just be using
>
> draw arrow1 arrow {0 0 0} {10 10 10} {20 20 20} {30 30 30}
> set picking draw
>
> and then moving it around by hand until it fit the cavity.
>
> Bob
>
>
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