One doesn't generally select bonds, only atoms. That is a subtle
distinction.
To connect all atoms that are bonded within, say 1.2 and 1.3 angstroms,
you could say:
11.0
-----
connect 1.2 1.3 {*} {*} hbond modify
select connected("hbond")
Trick here is to connect them first, because that command is more flexible.
11.1
-----
theBonds = connected(1.2, 1.3)
theAtoms = connected(1.2,1.3).atoms
select theBonds_set;color bonds white
x = connected(1.2,1.3,"single").label("%a1 %a2 %LENGTH %ORDER")
message @x
Bob
Mauricio Carrillo Tripp wrote:
> Hi,
> I've been using JMol 11.0.1 for the past few days now, and I haven't
> been able to figure out
> a way to select all bonds longer than an specific length, say 4 A.
> I've tried different ways using select w/o measure allconnected with
> no success.
> Does anybody know how to do this? thanks
>
> --
> 0 | Mauricio Carrillo Tripp, PhD
> / | Department of Molecular Biology
> 0 | The Scripps Research Institute
> \ | 10550 North Torrey Pines Road
> 0 | La Jolla, California 92037
> / | [EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>
> 0 | http://www.scripps.edu
>
> ** Aut tace aut loquere meliora silentio **
>
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