OK I see how to do this right now, and I'll see if I can set up a user flag for bonding the symmetry atoms. Actually, maybe in the case of mol2 files this should be automatic -- as I recall they are always packed or, to put it another way, we can't deal with the symmetry operators anyway, so we just call it "P1*".
It is a nice application of the new "load append" capability. You can do it with the following: appendnew = false load t.mol2 select *;translateselected {1/1 0 0} load append "" select *;translateselected {0 1/1 0} load append "" ...etc... On 4/23/07, Bob Hanson <[EMAIL PROTECTED]> wrote: > Well, let's see. > > I can display the molecules one at a time using: > > display molecule=1 > display molecule=2 > > etc. > > So that takes care of the no-symmetry issue. > > But you want to take this file and apply symmetry operators and > multiple unit cells, is that right? > > OK, the problem comes down to the fact that in general when you apply > symmetry operators it is quite common to have redundant operators. > BUT, am I correct that this kind of data is "prepacked" - that is, > only the translational operators are necessary? All the rotations and > reflections and such are already represented? No duplicate atom > positions if we just added translations? > > Bob > ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users