Thought I'd post to say that I've finally updated our protein motif web facility with Jmol 11 (.1.36) using the new 'zoom (selected)' functionality and the perspective mode 11, and it seems to be working on all Mac browsers and Windows IE7. Anyone interested can see it at:
http://doolittle.ibls.gla.ac.uk/motif Just choose from the ID lookup for an example protein, choose a motif (or pre-run with 'all' to find what's there) and select the 3D view. The single-motif alternative to the initial whole protein view uses the zoom (selected) to best effect (although it is now used for the whole protein and improves some which used to come up too small.) The reason this is so nice for me is that all the pages are generated programatically from a database, so I can never know how many atoms, residues, ligands etc I want to zoom to. Thanks again to Bob and the rest of the team for Jmol 11. I incurred a few scars in the process of upgrading, but it was worth it in the end. David PS Any criticisms or suggestions regarding the web facility are welcomed. -- _______________________________________________________________ David P.Leader, Biochemistry and Molecular Biology Davidson Building, University of Glasgow, Glasgow G12 8QQ, UK Phone: +44 41 330-5905 http://doolittle.ibls.gla.ac.uk/leader _______________________________________________________________ ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
