Frieda Reichsman wrote: > Hi Bob, > > Did you see the post about having emptied cache/restarted browser? > Really not sure what you mean, since I'm not aware that that is an > ineffective measure regarding cache... Also this happened on two > different machines. So maybe there is some level of caching that I do > not understand? > I think it's a level of change none of us understand -- the cache I was referring to was the Java cache, which is where the JAR files go, which is different (sigh) from the "browser cache"; apparently that was not cleared. I've seen it happen, but I don't know exactly how to remedy it. Shouldn't be a major issue. Somehow the Java Virtual Machine gets messed up and tries to read the wrong set of JAR files.
Bob > Frieda > > > On May 17, 2007, at May 17, 12:10 PM, Bob Hanson wrote: > >> I'll bet if you move them back it will work just fine as well. Really it >> was a browser caching problem. When you moved the page your browser >> loaded the files again. That's all. >> >> Frieda Reichsman wrote: >> >>> OK, I have repaired the tutorial but am not understanding why it was >>> not working the way it was. I moved the applets up a directory so they >>> are "above" the page that calls them, and changed the directory in >>> jmolInitialize accordingly. Now it works. >>> >>> I thought this structure of the applets being in a directory somewhere >>> above was only necessary for running an applet locally? Did this >>> change somewhere along the line? >>> >>> Frieda >>> >>> >>> On May 16, 2007, at May 16, 11:05 PM, Bob Hanson wrote: >>> >>>> I think it's just a caching problem. >>>> >>>> Frieda Reichsman wrote: >>>> >>>>> Hi, I have a tutorial that worked about 1 year ago with no >>>>> problems. I >>>>> just re-uploaded it and get this error: >>>>> >>>>> load: class JmolApplet not found. >>>>> java.lang.ClassNotFoundException: JmolApplet >>>>> at sun.applet.AppletClassLoader.findClass(AppletClassLoader.java:168) >>>>> at java.lang.ClassLoader.loadClass(ClassLoader.java:306) >>>>> at sun.applet.AppletClassLoader.loadClass(AppletClassLoader.java:119) >>>>> at java.lang.ClassLoader.loadClass(ClassLoader.java:251) >>>>> at sun.applet.AppletClassLoader.loadCode(AppletClassLoader.java:599) >>>>> at sun.applet.AppletPanel.createApplet(AppletPanel.java:721) >>>>> at sun.plugin.AppletViewer.createApplet(AppletViewer.java:1826) >>>>> at sun.applet.AppletPanel.runLoader(AppletPanel.java:650) >>>>> at sun.applet.AppletPanel.run(AppletPanel.java:324) >>>>> at java.lang.Thread.run(Thread.java:613) >>>>> Caused by: java.io.IOException: open HTTP connection failed. >>>>> at sun.applet.AppletClassLoader.getBytes(AppletClassLoader.java:271) >>>>> at sun.applet.AppletClassLoader.access$100(AppletClassLoader.java:44) >>>>> at sun.applet.AppletClassLoader$1.run(AppletClassLoader.java:158) >>>>> at java.security.AccessController.doPrivileged(Native Method) >>>>> at sun.applet.AppletClassLoader.findClass(AppletClassLoader.java:155) >>>>> ... 9 more >>>>> >>>>> __________________________________ >>>>> >>>>> When I run this on my machine's server instead of online, I get this >>>>> error: >>>>> >>>>> FileManager.openFile(../structures/1mbo.pdb) >>>>> error opening >>>>> file:/Library/WebServer/Documents/patterson_hb/structures/1mbo.pdb >>>>> java.security.AccessControlException: access denied >>>>> (java.io.FilePermission >>>>> /Library/WebServer/Documents/patterson_hb/structures/1mbo.pdb read) >>>>> openFile(../structures/1mbo.pdb) 32 ms >>>>> __________________________________ >>>>> >>>>> I don't think any of the file hierarchy has changed; Jmol.js is in >>>>> the >>>>> right place, etc. >>>>> I'm puzzled; haven't had any issues like this in a long time. Can >>>>> someone steer me toward what else to look for? >>>>> >>>>> Thanks, >>>>> Frieda >>>>> >>>>> /////////////////////////////////////////// >>>>> >>>>> Frieda Reichsman >>>>> Molecules in Motion >>>>> Interactive Molecular Structures >>>>> http://www.moleculesinmotion.com >>>>> >>>>> /////////////////////////////////////////// >>>>> >>>>> >>>>> ------------------------------------------------------------------------ >>>>> >>>>> ------------------------------------------------------------------------- >>>>> This SF.net email is sponsored by DB2 Express >>>>> Download DB2 Express C - the FREE version of DB2 express and take >>>>> control of your XML. No limits. Just data. Click to get it now. >>>>> http://sourceforge.net/powerbar/db2/ >>>>> >>>>> ------------------------------------------------------------------------ >>>>> >>>>> _______________________________________________ >>>>> Jmol-users mailing list >>>>> [email protected] >>>>> <mailto:[email protected]> >>>>> <mailto:[email protected]> >>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>>> >>>>> >>>> >>>> >>>> ------------------------------------------------------------------------- >>>> This SF.net email is sponsored by DB2 Express >>>> Download DB2 Express C - the FREE version of DB2 express and take >>>> control of your XML. No limits. Just data. Click to get it now. >>>> http://sourceforge.net/powerbar/db2/ >>>> _______________________________________________ >>>> Jmol-users mailing list >>>> [email protected] >>>> <mailto:[email protected]> >>>> <mailto:[email protected]> >>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >>> >>> /////////////////////////////////////////// >>> >>> >>> Frieda Reichsman >>> >>> Molecules in Motion >>> >>> Interactive Molecular Structures >>> >>> http://www.moleculesinmotion.com >>> >>> >>> /////////////////////////////////////////// >>> >>> >>> >>> ------------------------------------------------------------------------ >>> >>> ------------------------------------------------------------------------- >>> This SF.net email is sponsored by DB2 Express >>> Download DB2 Express C - the FREE version of DB2 express and take >>> control of your XML. No limits. Just data. Click to get it now. >>> http://sourceforge.net/powerbar/db2/ >>> >>> ------------------------------------------------------------------------ >>> >>> _______________________________________________ >>> Jmol-users mailing list >>> [email protected] >>> <mailto:[email protected]> >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >> >> >> ------------------------------------------------------------------------- >> This SF.net email is sponsored by DB2 Express >> Download DB2 Express C - the FREE version of DB2 express and take >> control of your XML. No limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> _______________________________________________ >> Jmol-users mailing list >> [email protected] >> <mailto:[email protected]> >> https://lists.sourceforge.net/lists/listinfo/jmol-users > > > /////////////////////////////////////////// > > > Frieda Reichsman > > Molecules in Motion > > Interactive Molecular Structures > > http://www.moleculesinmotion.com > > > /////////////////////////////////////////// > > > >------------------------------------------------------------------------ > >------------------------------------------------------------------------- >This SF.net email is sponsored by DB2 Express >Download DB2 Express C - the FREE version of DB2 express and take >control of your XML. No limits. Just data. Click to get it now. >http://sourceforge.net/powerbar/db2/ > >------------------------------------------------------------------------ > >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
