Dear Bob, I have been testing Jmol applet prerelease 11.3.0 downloaded from sourceforge today. I think I found two bugs. BOTH OF THESE BUGS ARE ALSO PRESENT IN 11.2.1. The ZOOMTO BUG IS PRESENT IN 11.2.0. The ZOOMTO BUG IS PRESENT IN 11.1.49. I think the hover bug is also present in 11.2.0 and 11.1.49 but it is tricky to be sure. BOTH bugs are ABSENT in 11.1.12.
1. Often there is no hover report. When there is none, I cannot turn it on with "hover" or "hover hello". Sometimes I get hover reports at the outset, but then none. I have not been able to discern what inactivates hover. However, the same scripts leave hover intact in 11.1.12. So something about hover has changed in 11.3.0 that makes it seemingly easy to disable. 2. "zoomto" with no parameters fails to zoom 2X as it did in earlier versions. Similarly, "zoomto out" does not change the zoom in 11.3.0. 3. zoomto (center) results in an incorrect center when a range of residue numbers is the atom expression. Parenthetically, in Jmol 11.1.12, with "set debugscript on", the report for "center 59-75" is script 5 started center 59-7519200 Script completed Notice the apparently spurious "19200" appended. However, the command worked. In Jmol 11.3.0, these commands center correctly (but fail to zoom): zoomto (59) zoomto (75) This command works correctly but is reported without the dash with set debugscript on: center 59-75 script 22 started center 59 75 Script completed This command centers the molecule incorrectly (WAY off the intended center) zoomto (59-75) script 23 started zoomTo ( ( 59 -75 ) ) Script completed -Eric /* - - - - - - - - - - - - - - - - - - - - - - - - - - - Eric Martz, Professor Emeritus, Dept Microbiology U Mass, Amherst -- http://www.umass.edu/molvis/martz Biochem 3D Education Resources http://MolviZ.org See 3D Molecules, Install Nothing! - http://firstglance.jmol.org Protein Explorer - 3D Visualization: http://proteinexplorer.org Workshops: http://workshops.proteinexplorer.org World Index of Molecular Visualization Resources: http://molvisindex.org ConSurf - Find Conserved Patches in Proteins: http://consurf.tau.ac.il Atlas of Macromolecules: http://atlas.proteinexplorer.org PDB Lite Macromolecule Finder: http://pdblite.org Molecular Visualization EMail List (molvis-list): http://bioinformatics.org/mailman/listinfo/molvis-list - - - - - - - - - - - - - - - - - - - - - - - - - - - */ ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
