Bob, First a mea culpa, I was using an earlier Jmol version that allowed creation of orbitals, but not changing them by the method you describe. Second, using Jmol version 11.2.0 and allene as a test molecule, I am able to create both opaque and translucent s and p orbitals on selected carbon atoms. The terms "translucent" and "opaque" must follow the color designation, not precede it. I am also able to change the color and translucency, but not the scale, of designated s-orbitals using your syntax. However, in order to change p-orbitals, each lobe must be selected and changed separately by a pxa and pxb identifier. The ability to designate two colors and a translucency by the same statement, as in the "lcaocartoon create" command does not seem to work.
Bill Bob Hanson wrote: >sorry -- two mistakes there; I only identified the first. It should be: > >lcaocartoon o1 scale 1.2 color orange create "s" >color $o1s blue > > >because you have to designate both the identifier (o1) and the lobe >designation (s or pza or pzb, sp3a, sp3b, etc) in the color command. > > > > ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
