Hi Bob and thank-you for your answer ! I assume that in #1 it should read "select whatever; calculate surfaceDistance" ? Paul
----- Message d'origine ----- De: Bob Hanson <[EMAIL PROTECTED]> Date: Mercredi, Novembre 21, 2007 8:37 pm Objet: Re: [Jmol-users] color a surface according to distance from a selection À: jmol-users@lists.sourceforge.net > PAUL, this is possible, and with Jmol 11.3.46 it will be > especially good. > > # 1: create the surfaceDistance property values > > select whatever; calculate surface > > # 2: create the isosurface > > isosurface select(someAtoms) ignore(whatever) sasurface /* or > MOLECULAR > */ map property surfaceDistance > > > In the current version of Jmol, this produces sort of a patchy > isosurface, because the color of any piece of the isosurface due > to a > given atom is based on just that atom's property value. In Jmol > 11.3.46 > this will be much smoother. The patchy look can be created if > desired using > > set isosurfacePropertySmoothing false > > > > Bob > > > > > [EMAIL PROTECTED] wrote: > > Hello Jmolers, > > I would like to know if there is a way to color an isosurface > with a gradient mapping the distance from the different vertex to > the selection set. There is a similar function in chime which > allows to emphasize the contacts between two chains (contact > surface in protein explorer). > > My aim is to show the contacts between an antibody and an antigen. > > Thanks in advance if you have any clue for doing that. > > Paul > > > > ----------------------------------------------------------------- > -------- > > This SF.net email is sponsored by: Microsoft > > Defy all challenges. Microsoft(R) Visual Studio 2005. > > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > > _______________________________________________ > > Jmol-users mailing list > > Jmol-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > ------------------------------------------------------------------- > ------ > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2005. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
