I think some sort of translateSelected might be what you need.

> Hello everyone!
>
>   I now am trying to display 3 proteins in a figures.
>   For example, I have 3 proteins, 1XBL.pdb, 1DKG.pdb, and 1DKX.pdb.
>   What I want to do is I want to display this 3 protein structures at same
> time, and some residues are combinded together such that for 1XBL there
> are 5 interface residues of which the residue IDs are 30 36 69 71 741,
> for 1DKG there are 3 interface residues of which the residue IDs are 13
> 116 174, and for 1DKX there are 4 interface residues of which the
> residue IDs are 6 405 447 483. Based on this information I want to put
> all three proteins are closed to each other.
>   I tried to use the commend: load append "1XBL.pdb" "1DKG.pdb"
> "1DKX.pdb", but I cannot move all the proteins independently.
>   Do you have any idea how to handle this problem? If so, please help me!!
>
>   Simpler example is shown below
>   If the structure of Protein A and B looks like this
>
>   Protein A:
>   |-----------|
>
>   Protein B:
>   ___|____
>         |
>
>   So, what I want to do is to combine Protein A and Protein B. Just like
> this.
>
>   Combine A and B
>   |-----------|
>          ___|____
>                |
>
>   Thanks
>
>
>
>
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