Hi Bob, The Java version in MATLAB (application) is JRE 1.6. Since Jmol code did not change it must be some changes in MATLAB side. I need to look at into it more. But I will try your suggestion first.
As always thank you very much for your timely answers. Li Yang -----Original Message----- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of [EMAIL PROTECTED] Sent: Thursday, January 24, 2008 6:59 AM To: [email protected] Subject: Re: [Jmol-users] debug print out for popup? > Hi Bob, > > Thank you so much for the help. Adding > > viewer.setStringProperty("defaults", "Jmol"); > > did removed the message. > > > I have another question about loading a file using the script. It used > to be > load 1ubi.pbd > will load the pdb file from current directory. But now Jmol seemed to > add the path of the directory where the application starts to the file > name and it can not find the file even it is in current directory. Is > this intended behavior? Li Yang, As far as I know nothing has changed. If you use "1ubi.pdb" Jmol has always added the full path to that using simply File file = new File(name); fullPath = file.getAbsolutePath(); So perhaps it has something to do with Java versions and how File.getAbsolutePath() is interpreted. Note that you can designate a default directory, which could be your application directory if you wish, using viewer.setStringProperty("defaultDirectory", "file://some/directory/path"); That seems to me a good solution in this case. Bob > > Thanks, > > Li Yang > > -----Original Message----- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] On Behalf Of > [EMAIL PROTECTED] > Sent: Tuesday, January 22, 2008 7:37 AM > To: [email protected] > Subject: Re: [Jmol-users] debug print out for popup? > > This is a bug. I've reported it and will fix it later next week when I > return to the US. You can avoid the message by having your application > send > > viewer.setStringProperty("defaults", "Jmol"); > > or > > viewer.setBooleanProperty("perspectiveDepth", true); > > (or FALSE, if you prefer) prior to whatever command you have that is > invoking > > viewer.getBooleanProperty("perspectiveDepth") > > Bob > >> Hi Bob, >> >> >> >> I am embedding Jmol 11.4.RC in my applications. Whenever I > right-click >> to bring up the context menu, I got this line print to my log window. >> It looks like a debug statement. >> >> >> >> viewer.getBooleanProperty(perspectivedepth) - unrecognized >> >> Thanks, >> >> >> >> Li Yang >> >> > ------------------------------------------------------------------------ > - >> This SF.net email is sponsored by: Microsoft >> Defy all challenges. Microsoft(R) Visual Studio 2008. >> > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/_________________ > ______________________________ >> Jmol-users mailing list >> [email protected] >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> > > > > ------------------------------------------------------------------------ > - > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2008. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > > ------------------------------------------------------------------------ - > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2008. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > ------------------------------------------------------------------------ - This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
