On Tue, Mar 4, 2008 at 6:34 PM, Robin Emig <[EMAIL PROTECTED]> wrote: > There are a couple of features that pymol and DiscoveryViewer have that > doesn't seem to be in Jmol. Can anyone comment if they do exist, or if > someone is working on them. > > 1) PyMol has that great object/selection/etc list on the right hand > side, where the user can quickly change the color, style, etc of everything > displayed > > 2) Pymol has a "mutation" wizard (actually so does a Package called > KiNG), where you can select a residue, mutate it, and rotate through all the > rotamers, in addition it will show collisions as red circles > > 3) DSV has a "Hierchy" window, a simple tree browser showing the > chains, amino acids, atoms. Which allows selections > > 4) PyMol and DSV both have a "sequence" view > > If these do not exist in Jmol as of now, are they within the scope of Jmol, > or should projects like Bioclipse, Strap, or other be the places this > functionality should exist in.
Jmol focusses indeed on the viewing... Bioclipse already does some of what you mentioned (3,4): http://wiki.bioclipse.net/index.php?title=Net.bioclipse.jmol Egon -- ---- http://chem-bla-ics.blogspot.com/ ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
