I attached the state script, but you can reproduce it (hopefully) by copying the state that results after loading the following web page http://144.92.39.89/~xavier/web/openstate/<http://144.92.39.89/%7Exavier/web/openstate/>
I think the problematic lines are color isosurface translucent 128 [xffa500]; color $pos01 "roygb" range -0.05 0.05; Thanks Bob! Xavier On Thu, Nov 20, 2008 at 4:56 PM, Robert Hanson <[EMAIL PROTECTED]> wrote: > please send a state script that I can reproduce or a script to run. > > On Thu, Nov 20, 2008 at 12:11 PM, Xavier Prat-Resina <[EMAIL PROTECTED] > > wrote: > >> Thanks for the fix Bob! >> Now (revision 10348) the stateinfo contains the transparency but I can see >> that the VDW surface >> has some colorless spots. Would it be possible to fix that? >> Thanks again >> >> Xavier >> >> >> On Wed, Nov 19, 2008 at 5:23 PM, Robert Hanson <[EMAIL PROTECTED]>wrote: >> >>> it's a bug. I'll fix it tonight. >>> >>> On Wed, Nov 19, 2008 at 2:24 PM, Xavier Prat-Resina < >>> [EMAIL PROTECTED]> wrote: >>> >>>> Dear jmol users, >>>> >>>> I'm trying to open a new jmol window copying the old state using >>>> stateinfo. >>>> Everything works fine with only one exception: the transparency of a >>>> solvent >>>> mep isosurface. >>>> Here's an example: >>>> http://144.92.39.89/~xavier/web/openstate/<http://144.92.39.89/%7Exavier/web/openstate/> >>>> when I click on the new window the state has no information about the >>>> transparency >>>> and the isosurface is opaque. I might be doing something wrong but I >>>> can't figure out what. >>>> >>>> By the way, if you try this with Mac/Firefox it doesn't work. There >>>> appear some NaN >>>> numbers in _setModelState that make the whole script fail. Has anyone >>>> seen something like that >>>> before? >>>> >>>> Thanks! >>>> >>>> Xavier >>>> >>>> -- >>>> Xavier Prat-Resina >>>> Research Associate >>>> Journal of Chemical Education and University of Wisconsin >>>> 209 N. Brooks St. Madison, WI 53715-1116 >>>> >>>> Tel: 608 8901702 // Fax: 608 2627145 >>>> e-mail: xavier ( ) chem.wisc.edu ; skype: xavierprat >>>> http://x.prat.resina.googlepages.com >>>> >>>> >>>> ------------------------------------------------------------------------- >>>> This SF.Net email is sponsored by the Moblin Your Move Developer's >>>> challenge >>>> Build the coolest Linux based applications with Moblin SDK & win great >>>> prizes >>>> Grand prize is a trip for two to an Open Source event anywhere in the >>>> world >>>> http://moblin-contest.org/redirect.php?banner_id=100&url=/ >>>> _______________________________________________ >>>> Jmol-users mailing list >>>> Jmol-users@lists.sourceforge.net >>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>> >>>> >>> >>> >>> -- >>> Robert M. Hanson >>> Professor of Chemistry >>> St. Olaf College >>> 1520 St. Olaf Ave. >>> Northfield, MN 55057 >>> http://www.stolaf.edu/people/hansonr >>> phone: 507-786-3107 >>> >>> >>> If nature does not answer first what we want, >>> it is better to take what answer we get. >>> >>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >>> >>> ------------------------------------------------------------------------- >>> This SF.Net email is sponsored by the Moblin Your Move Developer's >>> challenge >>> Build the coolest Linux based applications with Moblin SDK & win great >>> prizes >>> Grand prize is a trip for two to an Open Source event anywhere in the >>> world >>> http://moblin-contest.org/redirect.php?banner_id=100&url=/ >>> _______________________________________________ >>> Jmol-users mailing list >>> Jmol-users@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >> >> >> -- >> Xavier Prat-Resina >> Research Associate >> Journal of Chemical Education and University of Wisconsin >> 209 N. Brooks St. Madison, WI 53715-1116 >> >> Tel: 608 8901702 // Fax: 608 2627145 >> e-mail: xavier ( ) chem.wisc.edu ; skype: xavierprat >> http://x.prat.resina.googlepages.com >> >> ------------------------------------------------------------------------- >> This SF.Net email is sponsored by the Moblin Your Move Developer's >> challenge >> Build the coolest Linux based applications with Moblin SDK & win great >> prizes >> Grand prize is a trip for two to an Open Source event anywhere in the >> world >> http://moblin-contest.org/redirect.php?banner_id=100&url=/ >> _______________________________________________ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > ------------------------------------------------------------------------- > This SF.Net email is sponsored by the Moblin Your Move Developer's > challenge > Build the coolest Linux based applications with Moblin SDK & win great > prizes > Grand prize is a trip for two to an Open Source event anywhere in the world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Xavier Prat-Resina Research Associate Journal of Chemical Education and University of Wisconsin 209 N. Brooks St. Madison, WI 53715-1116 Tel: 608 8901702 // Fax: 608 2627145 e-mail: xavier ( ) chem.wisc.edu ; skype: xavierprat http://x.prat.resina.googlepages.com
state.js
Description: JavaScript source
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