Robert Hanson wrote:
> I think this is all fixed now. The sequence of execution is:
>
> file load
> -J (Jmol script as argument)
> -s (script file name as argument)
> -j (Jmol script as argument)
> -x (exit)
>
> The -n switch (no display) adds an implicit -x, and it is executed
> only after the final script is run. Basically what the -x switch does
> is add ";exitJmol" to any second script present.
>
> So, for example, the following worked for me:
>
> jmol -ion -J "myparam = 3" -s "t.spt" -j "set echo top left;echo
> @myparam;cartoons on;write image 400 400 JPG \"t.jpg\";" "1crn.pdb"
>
There are still some problems in version 11.7.18 with the command-line
switches.
Now the script supplied with '-s' is not applied any more before the
image requested with "-w" is written. (no '-j' present)
This will break existing batch pipelines with Jmol.
If '-j' is also present the image doesn't even display the structure
(loaded within the '-j' script) but only "Jmol". And the image also
hasn't the size requested with '-g' but only the size of the "Jmol" text.
By the way, when I tried to compile the latest SVN version (revision
10492) I got the following error message:
[javac] java/Jmol/src/org/jmol/export/image/ImageCreator.java:203:
cannot resolve symbol
[javac] symbol : constructor IOException (java.io.IOException)
[javac] location: class java.io.IOException
[javac] throw new IOException(e);
[javac] ^
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -deprecation for details.
[javac] 1 error
Regards,
Rolf
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