Thanks Bob, I'll give this a go when the new version is released and report
back to you.
Eran
On Thu, Jan 22, 2009 at 2:16 AM, Robert Hanson <[email protected]> wrote:
> Jmol 11.7.22 has a new option for translate:
>
> translate x|y|z x.x nm|angstroms
>
> translate x 2.5 nm
> translate y 25 angstroms
> translate z 1.0 ang
>
> (only the first character, "n" or "a", is recognized)
>
> For x and y the result is to move the model that many angstroms or
> nanometers. For z the result is to change the zoom such that the width
> of the display at model center is (approximately) that many angstroms
> less -- resulting in the illusion of zoom "by that many angstroms". (I
> think...you tell me!)
>
> Maximum values are +/-100 units
>
> For now, uploaded to http://chemapps.stolaf.edu/jmol/docs/examples-11
>
> see
>
> http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.jar
>
>
>
>
>
> Bob
>
>
>
>
>
>
> On Wed, Jan 21, 2009 at 2:52 PM, Robert Hanson <[email protected]> wrote:
> > Eran, the zoom is by percent, where 100% is the distance of the edge
> > of a cube containing the entire model. So zoom 100% allows full
> > rotation of the model within the window (provided you also SET
> > ZOOMLARGE FALSE) And 50% gets you twice the width as zoom 100%. These
> > dimensions can be determined by looking at
> >
> > $ getproperty "boundboxinfo"
> >
> > boundboxinfo
> > center {10.5935 10.2105 6.0790005}
> > vector {13.6905 10.7265005 13.500999}
> > corner1 {24.284 20.937 19.58}
> > corner0 {-3.0970001 -0.51600075 -7.4219995}
> >
> > or, for example:
> >
> > $ x=getproperty("boundboxinfo","corner1")
> > $ print x
> > {24.284 20.937 19.58}
> >
> > var x = show("boundbox")
> >
> >
> > On Wed, Jan 21, 2009 at 7:56 AM, Eran Hodis <[email protected]> wrote:
> >> Does anyone know how to translate (in either the x or the y axis) by a
> >> specific number of Angstroms? Also is it possible to zoom in/out by a
> >> specific number of Angstroms?
> >
> > It's not exactly clear how that would work with translation, as the
> > front part is generally at a different scale than the back part, but
> > perhaps it could be defined in terms of the center. That's an idea.
> >
> > translate x 0.3 [nm|angstroms]
> >
> >> Thanks,
> >> Eran
> >>
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> >>
> >
> >
> >
> > --
> > Robert M. Hanson
> > Professor of Chemistry
> > St. Olaf College
> > 1520 St. Olaf Ave.
> > Northfield, MN 55057
> > http://www.stolaf.edu/people/hansonr
> > phone: 507-786-3107
> >
> >
> > If nature does not answer first what we want,
> > it is better to take what answer we get.
> >
> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> >
>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by:
> SourcForge Community
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