Jaim, I also suggest using write isosurface "xxxx.jvxl"
from the Jmol application or signed applet. This only works if you have a predefined notion of the surface you want to display; see notes at http://chemapps.stolaf.edu/jmol/docs/examples-11/isosurface.htm and http://chemapps.stolaf.edu/jmol/docs/misc/JVXL-format.pdf Basically, you just create the surface and write it to disk, then load it with the isosurface command: isosurface "xxxx.jvxl" Bob On Fri, Jan 30, 2009 at 7:52 AM, Karl Oberholser <[email protected]> wrote: > In settings other than Proteopedia I reduce the time required to display a > surface by generating a data file of the surface, and then just display the > surface rather than calculate the surface each time the script is run. I do > not think that there is a way to do this in Proteopedia, at least I have not > discovered how to do it if it is possible. > > Karl > >>>> <[email protected]> 1/30/2009 12:21 AM >>> > Hi, > > Is there a way to reduce the time required for Jmol for generating > and rendering surfaces? > > Can we optimize the script data to help Jmol, ie: store the coordinates in > the script on a better order, select atoms in a better way, pre-calculate > something ? > > Thanks in advance, > Jaim > -- > Dr Jaime Prilusky | [email protected] > Head of Bioinformatics ISPC | > R&D Bioinformatics and Data Management | > Weizmann Institute of Science | fax: 972-8-9344113 > 76100 Rehovot - Israel | tel: 972-8-9344959 > > OCA, http://oca.weizmann.ac.il (the protein structure/function database) > Proteopedia, http://www.proteopedia.org (because life has more than 2D) > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------------ > This SF.net email is sponsored by: > SourcForge Community > SourceForge wants to tell your story. > http://p.sf.net/sfu/sf-spreadtheword > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > > ------------------------------------------------------------------------------ > This SF.net email is sponsored by: > SourcForge Community > SourceForge wants to tell your story. > http://p.sf.net/sfu/sf-spreadtheword > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------------ This SF.net email is sponsored by: SourcForge Community SourceForge wants to tell your story. http://p.sf.net/sfu/sf-spreadtheword _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
