ok, that's in. I'll upload a version later this morning. These can be saved
as JVXL files with a space savings of about 75%.
use the OBJ keyword prior to the file name:
isosurface OBJ "sample.obj"
See attached image. Note that these can be mapped with values from another
function, just like "isosurface PMESH".
On Thu, Feb 19, 2009 at 11:16 AM, Robert Hanson <hans...@stolaf.edu> wrote:
> Eran,
>
> I see the format described at
> http://www.eg-models.de/formats/Format_Obj.html
> It's almost a pmesh file. It would be simple enough to get Jmol to read
> that format using the isosurface PMESH or just the pmesh command itself. We
> might have to ignore a few things (texture, normals, larger polygons.
>
> Have an example file I can play with?
>
> Bob
>
>
>
> On Thu, Feb 19, 2009 at 10:30 AM, Eran Hodis <eranho...@gmail.com> wrote:
>
>> I see.
>> Jmol can export 3D object files such as VRML -- can it read any of these
>> files as well? (I'm thinking that maybe I can convert my Wavefront object
>> file into one of these filetypes and then load it into Jmol, if possible)
>>
>> Eran
>>
>> On Thu, Feb 19, 2009 at 3:48 PM, Robert Hanson <hans...@stolaf.edu>wrote:
>>
>>> I have no idea...
>>>
>>>
>>> On Thu, Feb 19, 2009 at 9:46 AM, Eran Hodis <eranho...@gmail.com> wrote:
>>>
>>>> Hi Bob,
>>>> In our case it's a Wavefront object file.
>>>>
>>>> Eran
>>>>
>>>>
>>>> On Thu, Feb 19, 2009 at 3:37 PM, Robert Hanson <hans...@stolaf.edu>wrote:
>>>>
>>>>> "obj" could be anything. What is it?
>>>>>
>>>>> Electron density: I've worked out a preliminary version of electron
>>>>> density plotting and mapping in Jmol. It's pretty slow, because all of the
>>>>> occupied MOs have to be scanned. But it does work.... at least for RHF. I
>>>>> have it ignoring d and f orbitals.
>>>>>
>>>>> Bob
>>>>>
>>>>>
>>>>>
>>>>> On Thu, Feb 19, 2009 at 6:33 AM, Eran Hodis <eranho...@gmail.com>wrote:
>>>>>
>>>>>> Thanks Bob!
>>>>>> Another question for anyone who may know:
>>>>>>
>>>>>> I have a .obj file that I would like to visualize in Jmol. Is anyone
>>>>>> aware of a way to do this (possibly by first converting it to a different
>>>>>> format that Jmol can read)?
>>>>>>
>>>>>> Thanks for the help.
>>>>>>
>>>>>> Eran
>>>>>>
>>>>>>
>>>>>>>>> I for one would like to display isodensity surfaces for wave
>>>>>>>>> functions calculated with the GAMESS-US program.
>>>>>>>>>
>>>>>>>>> Jan
>>>>>>>>>
>>>>>>>>> >
>>>>>>>>> >Egon
>>>>>>>>> >
>>>>>>>>> >--
>>>>>>>>> >----
>>>>>>>>> >http://chem-bla-ics.blogspot.com/
>>>>>>>>> >
>>>>>>>>>
>>>>>>>>> >------------------------------------------------------------------------------
>>>>>>>>> >Create and Deploy Rich Internet Apps outside the browser with
>>>>>>>>> Adobe(R)AIR(TM)
>>>>>>>>> >software. With Adobe AIR, Ajax developers can use existing skills
>>>>>>>>> and code to
>>>>>>>>> >build responsive, highly engaging applications that combine the
>>>>>>>>> power of local
>>>>>>>>> >resources and data with the reach of the web. Download the Adobe
>>>>>>>>> AIR SDK and
>>>>>>>>> >Ajax docs to start building applications today-
>>>>>>>>> http://p.sf.net/sfu/adobe-com
>>>>>>>>> >_______________________________________________
>>>>>>>>> >Jmol-users mailing list
>>>>>>>>> >Jmol-users@lists.sourceforge.net
>>>>>>>>> >https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>>
>>>>>>>>> =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
>>>>>>>>> Jan H. Jensen Associate Research
>>>>>>>>> Professor
>>>>>>>>> Department of Chemistry jhjen...@kemi.ku.dk
>>>>>>>>> University of Copenhagen Phone: +45 35 32 02 39
>>>>>>>>> Universitetsparken 5 FAX: +45 35 32 02 14
>>>>>>>>> 2100 Copenhagen Denmark
>>>>>>>>> http://propka.ki.ku.dk/~jhjensen<http://propka.ki.ku.dk/%7Ejhjensen>
>>>>>>>>>
>>>>>>>>> =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ------------------------------------------------------------------------------
>>>>>>>>> Create and Deploy Rich Internet Apps outside the browser with
>>>>>>>>> Adobe(R)AIR(TM)
>>>>>>>>> software. With Adobe AIR, Ajax developers can use existing skills
>>>>>>>>> and code to
>>>>>>>>> build responsive, highly engaging applications that combine the
>>>>>>>>> power of local
>>>>>>>>> resources and data with the reach of the web. Download the Adobe
>>>>>>>>> AIR SDK and
>>>>>>>>> Ajax docs to start building applications today-
>>>>>>>>> http://p.sf.net/sfu/adobe-com
>>>>>>>>> _______________________________________________
>>>>>>>>> Jmol-users mailing list
>>>>>>>>> Jmol-users@lists.sourceforge.net
>>>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> ------------------------------------------------------------------------------
>>>>>>>> Create and Deploy Rich Internet Apps outside the browser with
>>>>>>>> Adobe(R)AIR(TM)
>>>>>>>> software. With Adobe AIR, Ajax developers can use existing skills
>>>>>>>> and code to
>>>>>>>> build responsive, highly engaging applications that combine the
>>>>>>>> power of local
>>>>>>>> resources and data with the reach of the web. Download the Adobe AIR
>>>>>>>> SDK and
>>>>>>>> Ajax docs to start building applications today-
>>>>>>>> http://p.sf.net/sfu/adobe-com
>>>>>>>> _______________________________________________
>>>>>>>> Jmol-users mailing list
>>>>>>>> Jmol-users@lists.sourceforge.net
>>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Robert M. Hanson
>>>>>>> Professor of Chemistry
>>>>>>> St. Olaf College
>>>>>>> 1520 St. Olaf Ave.
>>>>>>> Northfield, MN 55057
>>>>>>> http://www.stolaf.edu/people/hansonr
>>>>>>> phone: 507-786-3107
>>>>>>>
>>>>>>>
>>>>>>> If nature does not answer first what we want,
>>>>>>> it is better to take what answer we get.
>>>>>>>
>>>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>>>
>>>>>>>
>>>>>>> ------------------------------------------------------------------------------
>>>>>>> Create and Deploy Rich Internet Apps outside the browser with
>>>>>>> Adobe(R)AIR(TM)
>>>>>>> software. With Adobe AIR, Ajax developers can use existing skills and
>>>>>>> code to
>>>>>>> build responsive, highly engaging applications that combine the power
>>>>>>> of local
>>>>>>> resources and data with the reach of the web. Download the Adobe AIR
>>>>>>> SDK and
>>>>>>> Ajax docs to start building applications today-
>>>>>>> http://p.sf.net/sfu/adobe-com
>>>>>>> _______________________________________________
>>>>>>> Jmol-users mailing list
>>>>>>> Jmol-users@lists.sourceforge.net
>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> ------------------------------------------------------------------------------
>>>>>> Open Source Business Conference (OSBC), March 24-25, 2009, San
>>>>>> Francisco, CA
>>>>>> -OSBC tackles the biggest issue in open source: Open Sourcing the
>>>>>> Enterprise
>>>>>> -Strategies to boost innovation and cut costs with open source
>>>>>> participation
>>>>>> -Receive a $600 discount off the registration fee with the source
>>>>>> code: SFAD
>>>>>> http://p.sf.net/sfu/XcvMzF8H
>>>>>> _______________________________________________
>>>>>> Jmol-users mailing list
>>>>>> Jmol-users@lists.sourceforge.net
>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Robert M. Hanson
>>>>> Professor of Chemistry
>>>>> St. Olaf College
>>>>> 1520 St. Olaf Ave.
>>>>> Northfield, MN 55057
>>>>> http://www.stolaf.edu/people/hansonr
>>>>> phone: 507-786-3107
>>>>>
>>>>>
>>>>> If nature does not answer first what we want,
>>>>> it is better to take what answer we get.
>>>>>
>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>> Open Source Business Conference (OSBC), March 24-25, 2009, San
>>>>> Francisco, CA
>>>>> -OSBC tackles the biggest issue in open source: Open Sourcing the
>>>>> Enterprise
>>>>> -Strategies to boost innovation and cut costs with open source
>>>>> participation
>>>>> -Receive a $600 discount off the registration fee with the source code:
>>>>> SFAD
>>>>> http://p.sf.net/sfu/XcvMzF8H
>>>>> _______________________________________________
>>>>> Jmol-users mailing list
>>>>> Jmol-users@lists.sourceforge.net
>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>
>>>>>
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> Open Source Business Conference (OSBC), March 24-25, 2009, San
>>>> Francisco, CA
>>>> -OSBC tackles the biggest issue in open source: Open Sourcing the
>>>> Enterprise
>>>> -Strategies to boost innovation and cut costs with open source
>>>> participation
>>>> -Receive a $600 discount off the registration fee with the source code:
>>>> SFAD
>>>> http://p.sf.net/sfu/XcvMzF8H
>>>> _______________________________________________
>>>> Jmol-users mailing list
>>>> Jmol-users@lists.sourceforge.net
>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>
>>>>
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Professor of Chemistry
>>> St. Olaf College
>>> 1520 St. Olaf Ave.
>>> Northfield, MN 55057
>>> http://www.stolaf.edu/people/hansonr
>>> phone: 507-786-3107
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco,
>>> CA
>>> -OSBC tackles the biggest issue in open source: Open Sourcing the
>>> Enterprise
>>> -Strategies to boost innovation and cut costs with open source
>>> participation
>>> -Receive a $600 discount off the registration fee with the source code:
>>> SFAD
>>> http://p.sf.net/sfu/XcvMzF8H
>>> _______________________________________________
>>> Jmol-users mailing list
>>> Jmol-users@lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>
>>
>> ------------------------------------------------------------------------------
>> Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco,
>> CA
>> -OSBC tackles the biggest issue in open source: Open Sourcing the
>> Enterprise
>> -Strategies to boost innovation and cut costs with open source
>> participation
>> -Receive a $600 discount off the registration fee with the source code:
>> SFAD
>> http://p.sf.net/sfu/XcvMzF8H
>> _______________________________________________
>> Jmol-users mailing list
>> Jmol-users@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, CA
-OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise
-Strategies to boost innovation and cut costs with open source participation
-Receive a $600 discount off the registration fee with the source code: SFAD
http://p.sf.net/sfu/XcvMzF8H
_______________________________________________
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