All, I am attempting to write up a structure biology proposal for the NIH...and just trying to establish JMol capabilities here.
Would you al agree that the following function does not exist in Jmol? 1 Select residues in a protein's catalytic group 2 Note positions relative to each other 3 Search all of PDB, for that spatial arrangement of residues 4 Return back list of of PDB IDs with rms deviation, as a table This is basically blast but for structure. I've gotten some static from review about this but I think a plug in would be really welcomed. Its sequence agnostic. What do you think? If we could get funding for this, it would add to the developer squad already on the team. Let me know please. I'm not talking about SYBYL, I'd like something for the masses to use easily...Highlight three things and press a button to launch. Further I'd like the spirit of this request to remain open source please, but the idea is mentioned in straight up confidence to this group and is already written up, so no poaching eh? We all have a lot on our plates but JMol is a really good effort I'd like to support. Cheers, Chris Larsen -- ** Vecna's Maryland office moved 11/6/08. My new phone, fax, and address are below.** Christopher Larsen, Ph.D. Sr. Scientist / Grants Manager Vecna Technologies 6404 Ivy Lane #500 Greenbelt, MD 20740 Phone: (240) 965-4525 Fax: (240) 965-4507 240-737-1625 ------------------------------------------------------------------------------ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
