This opens fine for me, though a bit delayed waiting for a number of files
to load, I think.
Frieda, I've seen that message with other pages -- it has something to do
with Firefox setting the "java enabled" flag off after it gets an update
message. Reloading the browser seems to clear it, and it actually causes no
problem with Jmol.
Bob
On Mon, Jun 15, 2009 at 6:38 AM, Frieda Reichsman <[email protected]> wrote:
> Hi Eran and Eric,
> Do you remember this problem in Firefox/windows some time back? I just
> tried accessing this page
> http://www.biochemj.org/bj/405/0199/bj4050199add.htm
> in FF/Win and the controls worked fine, which seems to suggest that the
> problem is no more. Eran, do you know if Firefox has changed its ways?
>
> I also note that the first time I click a button on the page I get a popup
> that says that the browser is not compatible with Jmol - do you see this
> also? Then things seem to work fine.
>
> Thanks for any info,
> Frieda
>
> PS, Eran I am going to a workshop this week in Milwaukee where Joel is
> presenting on Proteopedia - really looking forward to meeting him. Hope you
> will head back over this way some time!
>
>
>
>
>> On Apr 21, 2008, at 8:51 AM, Eran Hodis wrote:
>>
>> Hi Frieda,
>> This is a issue we are dealing with in Proteopedia as well.
>>
>> The combination of Firefox version 2 and Java version 1.6.0_03+ (latest
>> stable release is 1.6.0_05) is more sensitive to security issues.
>>
>> When I do a reverse DNS lookup on the IP address you gave (64.95.78.91) I
>> get permaculture.gaiahost.coop. I'm guessing that this name does not
>> match the domain name of the website where you are having these problems.
>> This mismatch causes the combination of FF2 and Java 1.6.0_03+. At least
>> that is how I understand it at the moment, and if anyone wants to correct me
>> I'll be glad to be corrected.
>>
>> Regular commands seem to be passed ok to the Jmol applet, but scripts or
>> files stored on the server throw the error when you try to execute or load
>> them. The odd part is that any script or load file commands inside the
>> original definition of the applet works fine.
>>
>> Rolf pointed out a message board dealing with the issue in one of his
>> previous messages I've copied below:
>>
>>
>> This looks like a problem we are also facing with our "JenaLib Jmol
>> Viewer" and Firefox. It started with Java version 1.6.0_03.
>> Since Egon uses 1.6.0_05 I would expect that he will also have the same
>> "java.security.AccessControlException" problem with the following URL:
>>
>> http://www.fli-leibniz.de/cgi-bin/3d_mapping.pl?CODE=1deh
>>
>> I tried other Jmol sites and they worked fine with Java 1.6.0_03. But I
>> couldn't figure out what makes the difference.
>> The following thread in the Java forum
>> "http://forum.java.sun.com/thread.jspa?threadID=5230759"; seems to refer
>> to this problem. It is suggested there that the problem could be avoided
>> by connecting back to the server before any liveconnect calls are made.
>> But removing any callbacks didn't help with our viewer and I couldn't
>> detect any other liveconnect calls before loading the PDB file and
>> script from our server.
>>
>> As explanation for the difference between InternetExplorer and Firefox I
>> found the suggestion that the more stringent default security policy of
>> Firefox is responsible for it.
>>
>> Regards,
>> Rolf
>>
>>
>> Best regards,
>> Eran
>> On Mon, Apr 21, 2008 at 3:43 PM, Frieda Reichsman <[email protected]>
>> wrote:
>>
>>> CORRECTION - the pdb file does not load into the applet when all files
>>> are placed into the same directory. SO the breakage is even worse in
>>> this case.
>>>
>>> script ERROR: java.security.AccessControlException: access denied
>>> (java.net.SocketPermission 64.95.78.91:80 connect,resolve)
>>>
>>>
>>> --------Sent previously, incorrect:
>>> Placing all the files in the same directory (and changing all the file
>>> calls) still results in a security error when a script is called by a
>>> button:
>>>
>>>
>>> //////////////////////////////////////
>>>
>>> Frieda Reichsman, PhD
>>> Molecules in Motion
>>> Interactive Molecular Structures
>>> http://www.moleculesinmotion.com
>>> 413-253-2405
>>>
>>> //////////////////////////////////////
>>>
>>>
>>>
>>>
>>> On Apr 21, 2008, at 8:06 AM, Frieda Reichsman wrote:
>>>
>>> > I should have mentioned more about the problem - the Jmol loads just
>>> > fine on the page and responds to the mouse, but the problem occurs
>>> > when a script is called from a radio button, checkbox, etc. (Buttons
>>> > that do not call scripts work fine.)
>>> >
>>> > Frieda
>>> >
>>> > //////////////////////////////////////
>>> >
>>> > Frieda Reichsman, PhD
>>> > Molecules in Motion
>>> > Interactive Molecular Structures
>>> > http://www.moleculesinmotion.com
>>> > 413-253-2405
>>> >
>>> > //////////////////////////////////////
>>> >
>>> >
>>> >
>>> >
>>> >
>>> >
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>>
>>
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St. Olaf College
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Northfield, MN 55057
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