Rolf Huehne wrote: Thank you for the quick reply. > Nina Jeliazkova schrieb: > >> Hello All, >> >> I am looking for a guide or examples to use JMol in headless mode, for >> generating images on the server side. >> >> I have seen a discussion on the list from 2006, as well as wiki-related >> threads, but am still not sure if this is possible with the current release. >> Any examples or just hints where to look in the jmol code will be very >> useful. >> >> > Nina, please describe more specific what you want to do. > Is there also an applet and a user-defined view involved? > No. > Or do you just want to use Jmol to create images automatically defined > by some Jmol script(s)? > more or less. > We do the latter to create the images in the JenaLib atlas pages for PDB > entries, e.g.: http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1deh > There are structures (2D and 3D) of small molecules in a server side database. Currently 2D images are generated by various means (mainly via the CDK library). We would like to generate and provide 3D images (where possible) as well. There is no problem to use JMol applet to show a single structure, but embedding multiple jmol applets in a single web page for multiple structures is not the best option, so what I am looking is a server side code that will generate images (png, jpeg, etc.) .
Some examples (with 2D images) at http://ambit.uni-plovdiv.bg:8080/ambit2/dataset/1?max=10 I have a code, embedding Jmol in a Swing application, which runs fine since few years, but trying to rework it server side was not successful. First , the viewer needs a component, which is not available in a server side application viewer = Viewer.allocateViewer(component, adapter); Second, trying to use a fake Component and a Graphics from a specially created BufferedImage in viewer.renderScreenImage() just produces an empty image. Obviously, I am missing something. Hope this makes the setup clearer. Best regards, Nina > Regards, > Rolf > > ------------------------------------------------------------------------------ > This SF.Net email is sponsored by the Verizon Developer Community > Take advantage of Verizon's best-in-class app development support > A streamlined, 14 day to market process makes app distribution fast and easy > Join now and get one step closer to millions of Verizon customers > http://p.sf.net/sfu/verizon-dev2dev > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users >
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