Otis wrote: If you are after a web application, I don't think there's an alternative, but do you know Avogadro? It's an app, lets you build 3D molecules in real time.
> The clean up at the end of my current routine is really not bad > visually. I had to do it to keep the growing molecule in the window, > especially when "adding" methyl groups: Maybe instead of "center" you can use a smoothed command like "zoomTo" that will do the same but along some interval. In fact, center may eb able to do the same, both commands share a lot lately. > 3) Question: Is there a way to strip H's and then add them back in? There is a way to delete atoms, is there not? So you should be able to use that for all Hs. But I'm not sure, I don't delete atoms every day ;) Does not minimize just reposition the Hs? ------------------------------------------------------------------------------ SOLARIS 10 is the OS for Data Centers - provides features such as DTrace, Predictive Self Healing and Award Winning ZFS. Get Solaris 10 NOW http://p.sf.net/sfu/solaris-dev2dev _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
