Hi Alan Maybe you can use this: http://www.stolaf.edu/academics/chemapps/jmol/docs/#setbondstyles
set bondTolerance (decimal) When autobonding, the value of bondTolerance is added to the two bond radii of atoms being tested for a bond. A larger bondTolerance allows atoms that are further apart than the sum of their listed radii to still be bonded. This parameter should be adjusted prior to file loading for proper maintaining of the Jmol state. set minBondDistance (decimal) Sets the minimum bond distance for autobonding. Should be set prior to file loading for proper maintainence of the Jmol state. ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users