Jeff, be sure to check that out with 11.9 and get back to us.

On Fri, Mar 5, 2010 at 8:57 AM, Robert Hanson <hans...@stolaf.edu> wrote:

> I'll check that out. Don't try to get around it!
>
>
> On Thu, Mar 4, 2010 at 6:06 PM, Jeff Cohlberg <cohlb...@csulb.edu> wrote:
>
>> I am working on a student exercise on lysozyme, file 2LYZ, in which I
>> want the students to see the locations of the helices and sheets in the
>> overall structure.  I am using Jmol 11.8.18.
>>
>> To get a view of the beta sheet with clearly visibile H-bonds, I type
>> wireframe 100;spacefill off
>> restrict sheet; hbonds calculate; hbonds 40
>> Then to show where this is located in the molecule I type
>> select not sheet; wireframe
>> Now I want to do something similar with one of the helices.  I type
>> select 5-14
>> and immediately the H-bonds in the sheet shrink to the narrow default
>> wireframe width.
>> Typing       select sheet;hbonds 40    will not restore them.
>> When I type
>> select 5-14; hbonds calculate; hbonds 40
>> I see only the narrow H-bonds, and I have no control over their width
>> any more.
>>
>> Does anyone know why this is happening and how to get around it?
>>
>> Jeff Cohlberg
>>
>> --
>> Jeffrey A. Cohlberg, Professor and Chair
>> Department of Chemistry and Biochemistry
>> California State University, Long Beach
>> Long Beach, CA 90840
>> 562-985-4944            fax 775-248-1263
>> cohlb...@csulb.edu
>>
>>
>>
>> ------------------------------------------------------------------------------
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>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>



-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Download Intel&#174; Parallel Studio Eval
Try the new software tools for yourself. Speed compiling, find bugs
proactively, and fine-tune applications for parallel performance.
See why Intel Parallel Studio got high marks during beta.
http://p.sf.net/sfu/intel-sw-dev
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