I would like to get the count of disulfide bonds.
At http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm
javascript alert(jmolGetPropertyAsArray("bondInfo", "cys.sg").length)
alerts "3", the number of ssbonds in 1crn. It also correctly alerts
"6" for 3kwb (which six disulfides and four cys residues not in
disulfide bonds). Perfect!
1. Is the above syntax the correct/recommended method for javascript?
getproperty bondinfo sulfur
and
getproperty bondinfo "cys.sg" # quotes are required
report six bonded atoms for 3kwb.
2. However, I have not discerned the correct syntax for assigning the
number of ssbonds to a Jmol variable.
x = getproperty bondinfo "cys.sg"
print x
produces
Token[keyword(5/0x8101005) value="getproperty"]
print x.length
produces
0
???
The example at http://chemapps.stolaf.edu/jmol/docs/#getproperty
var modelInfo = jmolGetPropertyAsArray("modelInfo")
alert(modelInfo.modelCount)
for (int i = 0; i < modelInfo.modelCount; i++)
alert(modelInfo.models[i].name).
used .modelCount.
However, I see no .bondCount in the report from getproperty bondinfo "cys.sg".
3. How would I get the .bondCount in Jmol?
4. If I successfully get the .bondCount into a Jmol variable (or any
other value), can I retrieve that value in javascript?
x = 5
javascript alert(jmolGetPropertyAsString(x))
produces no alert at new.htm.
Thanks, -Eric
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