Hello, Martin

"translateSelected" does waht it says ;-) When you load a file, all atoms are 
selected.
So the question is: are your 2 molecules in the same model/frame or in two 
frames?

You probably do need "molecule=1"
Check syntax for atom expressions at 
http://chemapps.stolaf.edu/jmol/docs/#atomexpressions

Note that "model 1" does not affect selection, just changes what is display.
Maybe "select model=1"


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