Thanks again. I'm not a chemist. You guessed that, right? :) I studied chemistry... 30 years ago? Wow!... and I enjoyed it. Now I am helping out at a local school here and thought I'd try to make the amazing stuff that's been developed since I studied chemistry available to the kids here, if I can. And to myself as well!
So I began to make a little page that runs down some of the example SMILES from the DayLight website. A picture is worth a thousand words... especially if they're English words and you speak Thai! http://www.mueangchiangrai.net/chemistry, then choose SMILES and you'll get see the idea. I'm a little confused on the signed applet. I believe that's what's in use there, but I've never been made aware of it by the applet... it just works. I was under the impression that it would raise alarming bells and whistles that would make me head for the exit, but I haven't encountered that. I'm just sending a "load SMILES <string>" message to the applet and it's going over the wire to Indiana and retrieving the sdf description of the molecule in question... I think. Do I really need to use the signed applet to do that? The other catalogue is from sourceforge, served locally at my server rather than from sourceforge because I'd like to translate it, so I don't think I need the signed applet there either, do I? Again I very much appreciate all the help I've got and am just knocked out over Jmol amd some of the other things I'm finding over the wire. We used to have to buy (expensive!) little plastic kits to make molecular models... and no one made models of proteins at all! On 08/18/2010 11:57 AM, Otis Rothenberger wrote: > John- > > One more suggestion: > > I see that your site involves a catalog of compounds with Jmol > renderings loaded via molfiles. If you are interested in avoiding the > use of the signed applet, then you may find the NIH translate site useful: > > http://cactus.nci.nih.gov/translate/ > > The site translates SMILES strings into a number of formats, including > excellent 3D molfiles. > > Otis > > Otis Rothenberger > chemagic.com > > > On 8/18/2010 12:46 AM, John Francis Lee wrote: >> On 08/18/2010 11:26 AM, Robert Hanson wrote: >> >>> <script type="text/javascript"> >>> jmolInitialize("jmol", true) // presuming the applet files are in jmol/ >>> jmolApplet(400, s) >>> </script> >>> >> That works very well! Thanks a million. >> >> > > > > ------------------------------------------------------------------------------ > This SF.net email is sponsored by > > Make an app they can't live without > Enter the BlackBerry Developer Challenge > http://p.sf.net/sfu/RIM-dev2dev > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- "This message may have been intercepted and read by U.S. government agencies including the FBI, CIA, and NSA and/or the present government of Thailand without notice or warrant or knowledge of sender or recipient." John Francis Lee 246/3 Thanon Kaew Wai Mueang Chiangrai 57000 Thailand ------------------------------------------------------------------------------ This SF.net email is sponsored by Make an app they can't live without Enter the BlackBerry Developer Challenge http://p.sf.net/sfu/RIM-dev2dev _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
