Sure; you might consider the sort of thing we do with Jmol -- we use a
"monster script' that runs through thousands of known scripts (a collection
from the NEW pages). Not perfect; as you know, we still miss some
subtleties, but it performs amazingly well and finds many of our mistakes in
just the first "check script" pass. You might consider that. You could even
create PNG files and then compare them for identity.
Since we are not fixing the bugs in 11.8, that bug list is just growing.
Bob
On Tue, Sep 21, 2010 at 6:57 PM, Eric Martz <ema...@microbio.umass.edu>wrote:
> Yup, it works perfectly with CREATE. THANKS!!
>
> Upgrading the version of Jmol in Proteopedia is a bit complicated. We
> have to test the most demanding pages to make sure nothing is broken.
> When something is broken, it often involves the modifications of the
> state script that are done by the code that processes the state
> script for use in Proteopedia. The testing takes days and involves
> several people. Even then, we may be surprised later to find some
> problem we overlooked.
>
> Once, we had to back out of an upgrade. That was rather disastrous
> because it turns out that an earlier version of the applet, delivered
> by the server, does not replace a later version used by the same
> server on an earlier date. One has to manually delete the applet from
> the java cache. Yikes!
>
> So, it will be upgraded when we really really need one of the new features.
>
> -Eric
>
> At 9/21/10, you wrote:
> >Of course, you know what I'm going to say.... Why 11.8?
> >
> >You're just forgetting the CREATE keyword. Without that, the
> >coloring is defaulting to MODIFY, which it must, if you think about it.
> >
> >connect 1.2 2.0 (hydrogen) (oxygen) partial white translucent 5 CREATE
> >
> >
> >On Tue, Sep 21, 2010 at 5:11 PM, Eric Martz
> ><<mailto:ema...@microbio.umass.edu>ema...@microbio.umass.edu> wrote:
> >Tested in 12.0.14:
> >
> >Load ice
> >
> ><http://proteopedia.org/wiki/images/4/4d/Hielo.pdb>
> http://proteopedia.org/wiki/images/4/4d/Hielo.pdb
> >
> >The following command fails:
> >
> >connect 1.2 2.0 (hydrogen) (oxygen) partial white translucent 5
> >
> >However, if you do these two commands, they work
> >
> >connect 1.2 2.0 (hydrogen) (oxygen)
> >connect 1.2 2.0 (hydrogen) (oxygen) partial white translucent 5
> >
> >
> >I guess this is a bug unless I don't understand how it is supposed to
> work.
> >
> >(I know I could use "calculate hbonds" but I'm trying to make them in
> >the Jmol 11.8.24 in Proteopedia that doesn't have the new calculation.)
> >
> >-Eric
> >
> >
>
> >------------------------------------------------------------------------------
> >Start uncovering the many advantages of virtual appliances
> >and start using them to simplify application deployment and
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> >
> >--
> >Robert M. Hanson
> >Professor of Chemistry
> >St. Olaf College
> >1520 St. Olaf Ave.
> >Northfield, MN 55057
> ><http://www.stolaf.edu/people/hansonr>
> http://www.stolaf.edu/people/hansonr
> >phone: 507-786-3107
> >
> >
> >If nature does not answer first what we want,
> >it is better to take what answer we get.
> >
> >-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> >------------------------------------------------------------------------------
> >Start uncovering the many advantages of virtual appliances
> >and start using them to simplify application deployment and
> >accelerate your shift to cloud computing.
> >http://p.sf.net/sfu/novell-sfdev2dev
> >_______________________________________________
> >Jmol-users mailing list
> >Jmol-users@lists.sourceforge.net
> >https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
>
> ------------------------------------------------------------------------------
> Start uncovering the many advantages of virtual appliances
> and start using them to simplify application deployment and
> accelerate your shift to cloud computing.
> http://p.sf.net/sfu/novell-sfdev2dev
> _______________________________________________
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
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and start using them to simplify application deployment and
accelerate your shift to cloud computing.
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