Hi Pino,
Your problem is the following:
jmolLoadInlineScript( gid('editor').molFile()...
If you change .molFile to .jmeFile() it should load properly:
jmolLoadInlineScript( gid('editor').jmeFile()...
The minimize function in Jmol is very useful, but sometimes is gets
stuck in energy valleys that are not the best minimum. To have some fun
with your original flat cyclohexane, switch to model kit mode and select
drag atom (minimize). Then drag atoms toward the chair conformation. The
minimize function (UFF) will eventually get it right. The .jmeFile()
above, however, will load the chair properly.
Otis
Otis Rothenberger
chemagic.com
On 10/22/2010 6:03 AM, Mio_libero wrote:
> Hi people, i tried to use my page
> http://pinostriccoli.altervista.org/?page_id=873 with JME sending the
> code to JMOL. When drawing a simple cyclohexane, i have a planar ring
> with the C6H12 formula. When i put a substituent on the ring, it becomes
> as a cyclohexan should be in chair conformation. The minimize function
> is of no help in drawing the correct structure in Jmol.
> Jmol 12.0 RC29 on last update of firefox, winxp
> Pino
>
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------------------------------------------------------------------------------
Nokia and AT&T present the 2010 Calling All Innovators-North America contest
Create new apps & games for the Nokia N8 for consumers in U.S. and Canada
$10 million total in prizes - $4M cash, 500 devices, nearly $6M in marketing
Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store
http://p.sf.net/sfu/nokia-dev2dev
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